LasR - UniProtKB: P25084 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

ATCTATCTCATTTGCTAGTT
CTGTGCCCACGACCAG
CTGCGCGCTTGACAGC
CTGGCATAACAGATAG
CTAGCAAATGAGATAG
CTAAGATAGCTATCAC
GCGTCAGATTTCCTCG
GAAAGGGATAGGCTAG
CTTCGCAACCTCCCAG
CTTACAAATCTGTTAG
CTATCACTTGGAGTAG
CCTGCTTTTCTGCTAG
CTATCAATTGTATTAG
CTACCAGAACTGGTAG
CTGGCATAACAGATAG
TGAGCAGTTCAGATAG
CTGGCAGAACTGACAG
CTACCCACCCTGTTCG
CACCCTGTTCGTATCT
CTCGATCTTCTGATAG
TTTTCAGTTGGACTCG
TAGCGAAAACATATCG
CCATCTGACATGTAGG
CCTGGAGACCAGGCTG
CAATCAGAAATGTCCC
CTAACAAAAGACATAG
CCGTCAGTATTGTTAG
CTGTGAAATCTGGCAG
CTACCAGATCTGGCAG
CTGTCGGTTCGCATAG
CTGCCCATAATCCCCG
CTATCAGTTCTGTAGT
CTGTGAGATTTGGGAG
CTACCTGTTTTGGTAG
CTATCAGAATGAATAG
CTATCCATTCTGATGG
CCGACAAATCTGTGAC
CTGGCCGATGGGCGCG
CTATGCGTCCGGACAG
CTATCCGTTCTGTCCC
GTACCTGAACTGCCAG
CTATCTGAAATGCGAG
CTATCAATTGTATTAG
CTAGCAAATGAGATAG
CCATCTGACATGTAGG
CCTGGAGACCAGGCTG
CAATCAGAAATGTCCC
GCGTCAGATTTCCTCG
CTAAGATAGCTATCAC
TTTTCAGTTGGACTCG
TAGCGAAAACATATCG
TAACTAGCAAATGAGATAGATT
TCACATATCTGATAGCCTG
ACCTACCAGAACTGGTAGTT
ACCTGCCCGGAAGGGCAGGT
CACTGCCAGATCTGGCAGTT
ACCTACCAGATCTTGTAGTT
ACCTGCCAGTTCTGGCAGGT
ACCTGCTTTTCTGCTAGCT
CCCTACCAGATCTGGCAGG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AATCTATCTCATTTGCTAGTTAT
GCCCTGTGCCCACGACCAGTTCG
GACGCTGTCAAGCGCGCAGCCTT
ACCCTATCTGTTATGCCAGCACC
AATCTATCTCATTTGCTAGTTAT
TTTGTGATAGCTATCTTAGCATT
GCGGCGTCAGATTTCCTCGTCTA
CGGGAAAGGGATAGGCTAGCGGC
CTCCTGGGAGGTTGCGAAGCCGC
AACCTAACAGATTTGTAAGTTGC
CAGCTACTCCAAGTGATAGCTAG
CCACCTGCTTTTCTGCTAGCTAT
GAGCTAATACAATTGATAGGGTG
CACCTACCAGAACTGGTAGTTCT
ACCCTATCTGTTATGCCAGCACC
AACCTATCTGAACTGCTCAGGAG
GACCTGTCAGTTCTGCCAGGTGG
ATACGAACAGGGTGGGTAGCGGG
ACCCACCCTGTTCGTATCTCCGC
CAACTCGATCTTCTGATAGGGTC
AAACGAGTCCAACTGAAAAGGAC
TTTCGATATGTTTTCGCTACGCC
CTTCCATCTGACATGTAGGAATC
GTCCAGCCTGGTCTCCAGGCAGT
GATGGGACATTTCTGATTGAACG
AACCTATGTCTTTTGTTAGCGTA
TTACCGTCAGTATTGTTAGTTGT
TAACTGCCAGATTTCACAGGACG
CGCCTGCCAGATCTGGTAGGCGG
CCTCTGTCGGTTCGCATAGGTCG
TTGCTGCCCATAATCCCCGGACA
CCCACTACAGAACTGATAGTAGA
CGCCTCCCAAATCTCACAGTTCG
TAACTACCTGTTTTGGTAGGGTT
TTCCTATCAGAATGAATAGCTAT
AACCCATCAGAATGGATAGGGGT
GCTGTCACAGATTTGTCGGAAAT
TACCGCGCCCATCGGCCAGCCTG
GACCTGTCCGGACGCATAGCAGG
CGCGGGACAGAACGGATAGTTGA
TTAGTACCTGAACTGCCAGCTTG
CAGCTATCTGAAATGCGAGCGAT
GAGCTAATACAATTGATAGGGTG
AATCTATCTCATTTGCTAGTTAT
CTTCCATCTGACATGTAGGAATC
GTCCAGCCTGGTCTCCAGGCAGT
GATGGGACATTTCTGATTGAACG
GCGGCGTCAGATTTCCTCGTCTA
TTTGTGATAGCTATCTTAGCATT
AAACGAGTCCAACTGAAAAGGAC
TTTCGATATGTTTTCGCTACGCC
AATCTATCTCATTTGCTAGTTAT
GCGGTCACATATCTGATAGCCTG
GAACTACCAGTTCTGGTAGGTGC
TACCTGCCCGGAAGGGCAGGTTG
CAACTGCCAGATCTGGCAGTGGC
CAACTACAAGATCTGGTAGGTGC
AACCTGCCAGAACTGGCAGGTAG
CCACCTGCTTTTCTGCTAGCTAT
AACCTGCCAGATCTGGTAGGGCG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 P25084 dimer ATCTATCTCATTTGCTAGTT +[1559178:1559197] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) rsaL (PA1431) , lasR (PA1430) , lasI (PA1432) , PA1433 , PA1434
    ... ... rsaL lasR lasI PA1433 PA1434
    475 15505212
    NC_002516.2 P25084 not specified CTGTGCCCACGACCAG -[3891014:3891029] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) rhlR (PA3477) , rhlA (PA3479) , rhlB (PA3478)
    ... ... rhlR rhlA rhlB
    415 21719541
    NC_002516.2 P25084 not specified CTGCGCGCTTGACAGC -[3890706:3890721] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) rhlR (PA3477) , rhlA (PA3479) , rhlB (PA3478)
    ... ... rhlR rhlA rhlB
    415 21719541
    NC_002516.2 P25084 not specified CTGGCATAACAGATAG -[3890752:3890767] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) rhlR (PA3477) , rhlA (PA3479) , rhlB (PA3478)
    ... ... rhlR rhlA rhlB
    415 21719541
    NC_002516.2 P25084 dimer CTAGCAAATGAGATAG -[1559180:1559195] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lasI (PA1432) , rsaL (PA1431) , PA1434 , PA1433 , lasR (PA1430)
    ... ... lasI rsaL PA1434 PA1433 lasR
    421 19682264
    NC_002516.2 P25084 dimer CTAAGATAGCTATCAC +[2453504:2453519] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) pslL (PA2242) , pslK (PA2241) , pslJ (PA2240) , pslI (PA2239) , pslH (PA2238) , pslG (PA2237) , pslF (PA2236) , pslE (PA2235) , pslD (PA2234) , pslC (PA2233) , pslB (PA2232) , pslA (PA2231) , PA2229 , PA2230
    ... ... pslL pslK pslJ pslI pslH pslG pslF pslE pslD pslC pslB pslA PA2229 PA2230
    421 19682264
    NC_002516.2 P25084 dimer GCGTCAGATTTCCTCG +[2453397:2453412] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) pslL (PA2242) , pslK (PA2241) , pslJ (PA2240) , pslI (PA2239) , pslH (PA2238) , pslG (PA2237) , pslF (PA2236) , pslE (PA2235) , pslD (PA2234) , pslC (PA2233) , pslB (PA2232) , pslA (PA2231) , PA2229 , PA2230
    ... ... pslL pslK pslJ pslI pslH pslG pslF pslE pslD pslC pslB pslA PA2229 PA2230
    421 19682264
    NC_002516.2 P25084 dimer GAAAGGGATAGGCTAG +[5366212:5366227] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) cueR (PA4778) , PA4773 , PA4774 , PA4775 , pmrA (PA4776) , pmrB (PA4777)
    ... ... cueR PA4773 PA4774 PA4775 pmrA pmrB
    421 19682264
    NC_002516.2 P25084 dimer CTTCGCAACCTCCCAG +[5366231:5366246] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) cueR (PA4778) , PA4773 , PA4774 , PA4775 , pmrA (PA4776) , pmrB (PA4777)
    ... ... cueR PA4773 PA4774 PA4775 pmrA pmrB
    421 19682264
    NC_002516.2 P25084 dimer CTTACAAATCTGTTAG -[3730298:3730313] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA3326 , PA3331 , PA3330 , PA3329 , PA3328 , PA3327 , PA3340 , plpD (PA3339) , PA3338 , rfaD (PA3337) , PA3336 , PA3335 , PA3334 , fabH2 (PA3333) , PA3332
    ... ... PA3326 PA3331 PA3330 PA3329 PA3328 PA3327 PA3340 plpD PA3338 rfaD PA3336 PA3335 PA3334 fabH2 PA3332
    421 19682264
    NC_002516.2 P25084 dimer CTATCACTTGGAGTAG -[5247575:5247590] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA4677 , PA4679 , rimI (PA4678) , PA4675 , PA4676
    ... ... PA4677 PA4679 rimI PA4675 PA4676
    421 19682264
    NC_002516.2 P25084 dimer CCTGCTTTTCTGCTAG -[4170719:4170734] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) lasB (PA3724) , PA3732 , PA3731 , PA3730 , PA3729 , PA3728 , PA3727 , PA3726 , recJ (PA3725)
    ... ... lasB PA3732 PA3731 PA3730 PA3729 PA3728 PA3727 PA3726 recJ
    421 19682264
    NC_002516.2 P25084 dimer CTATCAATTGTATTAG -[2545013:2545028] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) ambE (PA2302) , ambD (PA2303) , ambC (PA2304) , ambB (PA2305) , PA2310 , PA2309 , PA2308 , PA2307 , ambA (PA2306) , PA2301
    ... ... ambE ambD ambC ambB PA2310 PA2309 PA2308 PA2307 ambA PA2301
    421 19682264
    NC_002516.2 P25084 dimer CTACCAGAACTGGTAG -[2934484:2934499] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA2592 , PA2591 , PA2588 , PA2589 , PA2590
    ... ... PA2592 PA2591 PA2588 PA2589 PA2590
    421 19682264
    NC_002516.2 P25084 dimer CTGGCATAACAGATAG -[3890752:3890767] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) rhlR (PA3477) , rhlA (PA3479) , rhlB (PA3478)
    ... ... rhlR rhlA rhlB
    421 19682264
    NC_002516.2 P25084 dimer TGAGCAGTTCAGATAG +[4373862:4373877] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA3908 , PA3907 , PA3906 , PA3905 , PA3904 , prfC (PA3903)
    ... ... PA3908 PA3907 PA3906 PA3905 PA3904 prfC
    421 19682264
    NC_002516.2 P25084 dimer CTGGCAGAACTGACAG +[1349078:1349093] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA1245 , aprD (PA1246) , aprE (PA1247) , aprF (PA1248) , PA1244
    ... ... PA1245 aprD aprE aprF PA1244
    421 19682264
    NC_002516.2 P25084 dimer CTACCCACCCTGTTCG -[2088307:2088322] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA1914 , PA1913 , femI (PA1912) , femR (PA1911) , PA1915 , PA1916 , PA1917 , PA1918
    ... ... PA1914 PA1913 femI femR PA1915 PA1916 PA1917 PA1918
    421 19682264
    NC_002516.2 P25084 dimer CACCCTGTTCGTATCT -[2088302:2088317] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA1914 , PA1913 , femI (PA1912) , femR (PA1911) , PA1915 , PA1916 , PA1917 , PA1918
    ... ... PA1914 PA1913 femI femR PA1915 PA1916 PA1917 PA1918
    421 19682264
    NC_002516.2 P25084 dimer CTCGATCTTCTGATAG -[2928028:2928043] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) pqsH (PA2587) , PA2588 , PA2589 , PA2590 , PA2591
    ... ... pqsH PA2588 PA2589 PA2590 PA2591
    421 19682264
    NC_002516.2 P25084 dimer TTTTCAGTTGGACTCG +[1257584:1257599] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA1159 , PA1158 , PA1160 , rrmA (PA1161) , dapE (PA1162) , ndvB (PA1163)
    ... ... PA1159 PA1158 PA1160 rrmA dapE ndvB
    421 19682264
    NC_002516.2 P25084 dimer TAGCGAAAACATATCG +[1257514:1257529] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) PA1159 , PA1158 , PA1160 , rrmA (PA1161) , dapE (PA1162) , ndvB (PA1163)
    ... ... PA1159 PA1158 PA1160 rrmA dapE ndvB
    421 19682264
    NC_002516.2 P25084 dimer CCATCTGACATGTAGG +[27576:27591] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) plcB (PA0026) , PA0027 , PA0028 , aroE (PA0025) , hemF (PA0024) , PA0029 , PA0030 , betC (PA0031) , PA0032
    ... ... plcB PA0027 PA0028 aroE hemF PA0029 PA0030 betC PA0032
    422 19682264
    NC_002516.2 P25084 dimer CCTGGAGACCAGGCTG +[4604596:4604611] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) bphP (PA4117) , bphO (PA4116) , PA4115 , PA4118 , aph (PA4119) , PA4120
    ... ... bphP bphO PA4115 PA4118 aph PA4120
    422 19682264
    NC_002516.2 P25084 dimer CAATCAGAAATGTCCC +[5836795:5836810] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA5184 , PA5183 , PA5182 , PA5181.1 , PA5181 , PA5180 , PA5179 , PA5185 , PA5186 , PA5187 , PA5188 , PA5189 , PA5190
    ... ... PA5184 PA5183 PA5182 PA5181.1 PA5181 PA5180 PA5179 PA5185 PA5186 PA5187 PA5188 PA5189 PA5190
    422 19682264
    NC_002516.2 P25084 dimer CTAACAAAAGACATAG -[1087613:1087628] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) mvfR (PA1003) , phnB (PA1002) , phnA (PA1001) , pqsE (PA1000) , pqsD (PA0999) , pqsC (PA0998) , pqsB (PA0997) , pqsA (PA0996) , nadA (PA1004) , PA1005
    ... ... mvfR phnB phnA pqsE pqsD pqsC pqsB pqsA nadA PA1005
    422 19682264
    NC_002516.2 P25084 dimer CCGTCAGTATTGTTAG +[3483484:3483499] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) xcpP (PA3104) , xcpQ (PA3105) , xcpR (PA3103) , xcpS (PA3102) , xcpT (PA3101) , xcpU (PA3100) , xcpV (PA3099) , xcpW (PA3098) , xcpX (PA3097) , xcpY (PA3096) , xcpZ (PA3095) , PA3094.3 , PA3094.2 , PA3094.1 , PA3106 , metZ (PA3107) , purF (PA3108)
    ... ... xcpP xcpQ xcpR xcpS xcpT xcpU xcpV xcpW xcpX xcpY xcpZ PA3094.3 PA3094.2 PA3094.1 PA3106 metZ purF
    422 19682264
    NC_002516.2 P25084 dimer CTGTGAAATCTGGCAG -[3893270:3893285] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) rhlA (PA3479) , rhlB (PA3478) , rhlR (PA3477) , PA3480 , PA3481 , metG (PA3482) , PA3483 , PA3484 , PA3485
    ... ... rhlA rhlB rhlR PA3480 PA3481 metG PA3483 PA3484 PA3485
    422 19682264
    NC_002516.2 P25084 dimer CTACCAGATCTGGCAG +[141753:141768] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA0122 , PA0121 , PA0120 , PA0119 , PA0123
    ... ... PA0122 PA0121 PA0120 PA0119 PA0123
    422 19682264
    NC_002516.2 P25084 dimer CTGTCGGTTCGCATAG +[163289:163304] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) nuh (PA0143) , PA0142 , PA0144 , PA0145
    ... ... nuh PA0142 PA0144 PA0145
    422 19682264
    NC_002516.2 P25084 dimer CTGCCCATAATCCCCG -[165120:165135] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA0144 , nuh (PA0143) , PA0142 , PA0145
    ... ... PA0144 nuh PA0142 PA0145
    422 19682264
    NC_002516.2 P25084 dimer CTATCAGTTCTGTAGT -[935325:935340] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA0855 , fumC2 (PA0854) , PA0853 , PA0856 , bolA (PA0857)
    ... ... PA0855 fumC2 PA0853 PA0856 bolA
    422 19682264
    NC_002516.2 P25084 dimer CTGTGAGATTTGGGAG +[1078072:1078087] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pqsA (PA0996) , pqsB (PA0997) , pqsC (PA0998) , pqsD (PA0999) , pqsE (PA1000) , ogt (PA0995) , cupC3 (PA0994) , cupC2 (PA0993) , cupC1 (PA0992) , phnA (PA1001) , phnB (PA1002) , mvfR (PA1003)
    ... ... pqsA pqsB pqsC pqsD pqsE ogt cupC3 cupC2 cupC1 phnA phnB mvfR
    422 19682264
    NC_002516.2 P25084 dimer CTACCTGTTTTGGTAG +[1803324:1803339] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA1656 , PA1657 , PA1658 , PA1659 , PA1655 , PA1654 , PA1653 , PA1652
    ... ... PA1656 PA1657 PA1658 PA1659 PA1655 PA1654 PA1653 PA1652
    422 19682264
    NC_002516.2 P25084 dimer CTATCAGAATGAATAG -[2291087:2291102] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) kynB (PA2081) , kynU (PA2080) , PA2082
    ... ... kynB kynU PA2082
    422 19682264
    NC_002516.2 P25084 dimer CTATCCATTCTGATGG +[2721746:2721761] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pvdS (PA2426) , pvdG (PA2425) , pvdL (PA2424) , PA2427 , PA2428
    ... ... pvdS pvdG pvdL PA2427 PA2428
    422 19682264
    NC_002516.2 P25084 dimer CCGACAAATCTGTGAC +[3293937:3293952] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA2939 , PA2938 , PA2937 , PA2936 , PA2935 , cif (PA2934) , PA2933 , morB (PA2932) , cifR (PA2931) , PA2930 , PA2929 , PA2940 , PA2941 , PA2942 , PA2942.1
    ... ... PA2939 PA2938 PA2937 PA2936 PA2935 cif PA2933 morB cifR PA2930 PA2929 PA2940 PA2941 PA2942 PA2942.1
    422 19682264
    NC_002516.2 P25084 dimer CTGGCCGATGGGCGCG +[3954756:3954771] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA3535 , PA3534 , PA3533 , PA3532 , bfrB (PA3531)
    ... ... PA3535 PA3534 PA3533 PA3532 bfrB
    422 19682264
    NC_002516.2 P25084 dimer CTATGCGTCCGGACAG +[4830567:4830582] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) flp (PA4306) , rcpC (PA4305) , rcpA (PA4304) , tadZ (PA4303) , tadA (PA4302) , tadB (PA4301) , tadC (PA4300) , tadD (PA4299) , PA4298 , tadG (PA4297) , pprB (PA4296) , fppA (PA4295) , PA4294 , pprA (PA4293) , PA4292 , PA4291 , PA4290 , PA4289 , PA4288 , PA4287 , PA4286 , recC (PA4285) , recB (PA4284) , recD (PA4283) , PA4282 , sbcD (PA4281)
    ... ... flp rcpC rcpA tadZ tadA tadB tadC tadD PA4298 tadG pprB fppA PA4294 pprA PA4292 PA4291 PA4290 PA4289 PA4288 PA4287 PA4286 recC recB recD PA4282 sbcD
    422 19682264
    NC_002516.2 P25084 dimer CTATCCGTTCTGTCCC -[5891086:5891101] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA5232 , PA5231 , PA5230 , PA5229 , PA5233
    ... ... PA5232 PA5231 PA5230 PA5229 PA5233
    422 19682264
    NC_002516.2 P25084 dimer GTACCTGAACTGCCAG -[883349:883364] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA0805 , PA0806
    ... ... PA0805 PA0806
    422 19682264
    NC_002516.2 P25084 dimer CTATCTGAAATGCGAG -[3791169:3791184] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) phnC (PA3384) , amrZ (PA3385) , PA3383 , phnE (PA3382) , PA3381 , PA3380 , PA3379 , PA3378 , PA3377 , PA3376 , PA3375 , PA3374 , PA3373 , PA3372 , PA3371 , PA3370 , PA3369
    ... ... phnC amrZ PA3383 phnE PA3381 PA3380 PA3379 PA3378 PA3377 PA3376 PA3375 PA3374 PA3373 PA3372 PA3371 PA3370 PA3369
    422 19682264
    NC_002516.2 P25084 dimer CTATCAATTGTATTAG -[2545013:2545028] Experimental technique details ChIP-PCR (ECO:0005620) ambB (PA2305) , ambC (PA2304) , ambD (PA2303) , ambE (PA2302) , PA2301 , ambA (PA2306) , PA2307 , PA2308 , PA2309 , PA2310
    ... ... ambB ambC ambD ambE PA2301 ambA PA2307 PA2308 PA2309 PA2310
    423 19682264
    NC_002516.2 P25084 dimer CTAGCAAATGAGATAG -[1559180:1559195] Experimental technique details ChIP-PCR (ECO:0005620) rsaL (PA1431) , lasI (PA1432) , lasR (PA1430) , PA1433 , PA1434
    ... ... rsaL lasI lasR PA1433 PA1434
    423 19682264
    NC_002516.2 P25084 dimer CCATCTGACATGTAGG +[27576:27591] Experimental technique details ChIP-PCR (ECO:0005620) plcB (PA0026) , PA0027 , PA0028 , aroE (PA0025) , hemF (PA0024) , PA0029 , PA0030 , betC (PA0031) , PA0032
    ... ... plcB PA0027 PA0028 aroE hemF PA0029 PA0030 betC PA0032
    423 19682264
    NC_002516.2 P25084 dimer CCTGGAGACCAGGCTG +[4604596:4604611] Experimental technique details ChIP-PCR (ECO:0005620) bphP (PA4117) , bphO (PA4116) , PA4115 , PA4118 , aph (PA4119) , PA4120
    ... ... bphP bphO PA4115 PA4118 aph PA4120
    423 19682264
    NC_002516.2 P25084 dimer CAATCAGAAATGTCCC +[5836795:5836810] Experimental technique details ChIP-PCR (ECO:0005620) PA5184 , PA5183 , PA5182 , PA5181.1 , PA5181 , PA5180 , PA5179 , PA5185 , PA5186 , PA5187 , PA5188 , PA5189 , PA5190
    ... ... PA5184 PA5183 PA5182 PA5181.1 PA5181 PA5180 PA5179 PA5185 PA5186 PA5187 PA5188 PA5189 PA5190
    423 19682264
    NC_002516.2 P25084 dimer GCGTCAGATTTCCTCG +[2453397:2453412] Experimental technique details Beta-gal reporter assay pslA (PA2231) , pslB (PA2232) , pslC (PA2233) , pslD (PA2234) , pslE (PA2235) , pslF (PA2236) , pslG (PA2237) , pslH (PA2238) , pslI (PA2239) , pslJ (PA2240) , pslK (PA2241) , pslL (PA2242) , PA2230 , PA2229
    ... ... pslA pslB pslC pslD pslE pslF pslG pslH pslI pslJ pslK pslL PA2230 PA2229
    424 19682264
    NC_002516.2 P25084 dimer CTAAGATAGCTATCAC +[2453504:2453519] Experimental technique details Beta-gal reporter assay pslA (PA2231) , pslB (PA2232) , pslC (PA2233) , pslD (PA2234) , pslE (PA2235) , pslF (PA2236) , pslG (PA2237) , pslH (PA2238) , pslI (PA2239) , pslJ (PA2240) , pslK (PA2241) , pslL (PA2242) , PA2230 , PA2229
    ... ... pslA pslB pslC pslD pslE pslF pslG pslH pslI pslJ pslK pslL PA2230 PA2229
    424 19682264
    NC_002516.2 P25084 dimer TTTTCAGTTGGACTCG +[1257584:1257599] Experimental technique details Beta-gal reporter assay PA1159 , PA1158 , PA1160 , rrmA (PA1161) , dapE (PA1162) , ndvB (PA1163)
    ... ... PA1159 PA1158 PA1160 rrmA dapE ndvB
    424 19682264
    NC_002516.2 P25084 dimer TAGCGAAAACATATCG +[1257514:1257529] Experimental technique details Beta-gal reporter assay PA1159 , PA1158 , PA1160 , rrmA (PA1161) , dapE (PA1162) , ndvB (PA1163)
    ... ... PA1159 PA1158 PA1160 rrmA dapE ndvB
    424 19682264
    NC_002516.2 P25084 dimer TAACTAGCAAATGAGATAGATT -[1559177:1559198] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) rsaL (PA1431) , lasR (PA1430) , lasI (PA1432) , PA1433 , PA1434
    ... ... rsaL lasR lasI PA1433 PA1434
    425 18045385
    NC_002516.2 P25084 not specified TCACATATCTGATAGCCTG +[5366181:5366199] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) cueR (PA4778) , pmrB (PA4777)
    ... ... cueR pmrB
    576 20233934
    NC_002516.2 P25084 not specified ACCTACCAGAACTGGTAGTT -[2934482:2934501] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) PA2591 , PA2590 , PA2589 , PA2592
    ... ... PA2591 PA2590 PA2589 PA2592
    578 17449616
    NC_002516.2 P25084 not specified ACCTGCCCGGAAGGGCAGGT -[2068995:2069014] Experimental technique details Beta-gal reporter assay - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) qscR (PA1898) , PA1897 , PA1896 , PA1895 , PA1894 , PA1893 , PA1892 , PA1891 , PA1890
    ... ... qscR PA1897 PA1896 PA1895 PA1894 PA1893 PA1892 PA1891 PA1890
    653 11544214
    NC_002516.2 P25084 not specified CACTGCCAGATCTGGCAGTT +[2031376:2031395] Experimental technique details Beta-gal reporter assay - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) PA1869
    ... ... PA1869
    653 11544214
    NC_002516.2 P25084 not specified ACCTACCAGATCTTGTAGTT +[4713405:4713424] Experimental technique details Beta-gal reporter assay - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) phzA1 (PA4210) , phzM (PA4209) , phzB1 (PA4211) , phzC1 (PA4212) , phzD1 (PA4213) , phzE1 (PA4214) , phzF1 (PA4215) , phzG1 (PA4216)
    ... ... phzA1 phzM phzB1 phzC1 phzD1 phzE1 phzF1 phzG1
    653 11544214
    NC_002516.2 P25084 not specified ACCTGCCAGTTCTGGCAGGT -[4170656:4170675] Experimental technique details Beta-gal reporter assay - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) lasB (PA3724)
    ... ... lasB
    766 8576049
    NC_002516.2 P25084 not specified ACCTGCTTTTCTGCTAGCT -[4170717:4170735] Experimental technique details Beta-gal reporter assay - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) lasB (PA3724)
    ... ... lasB
    766 8576049
    NC_002516.2 P25084 not specified CCCTACCAGATCTGGCAGG -[3889880:3889898] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Primer Extension assay (ECO:0005657) rhlI (PA3476)
    ... ... rhlI
    767 12076794

    LasR - UniProtKB: P25084 regulon and binding site collection of Pseudomonas aeruginosa UCBPP-PA14


    Sites are listed as curated.

    CTAACAAAAGACATAG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTAACAAAAGACATAG

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_008463.1 P25084 not specified CTAACAAAAGACATAG +[4562302:4562317] Experimental technique details Beta-gal reporter assay - Experimental technique details Site directed mutagenesis (ECO:0005667) mvfR (PA14_51340) , pqsB (PA14_51420) , pqsC (PA14_51410) , pqsD (PA14_51390) , pqsE (PA14_51380) , phnA (PA14_51360) , phnB (PA14_51350) , PA14_51320 , nadA (PA14_51330) , pqsA (PA14_51430)
      ... ... mvfR pqsB pqsC pqsD pqsE phnA phnB PA14_51320 nadA pqsA
      416 16735731

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      ATCTATCTCATTTGCTAGTT
      CTAACAAAAGACATAG
      CTGTGCCCACGACCAG
      CTGCGCGCTTGACAGC
      CTGGCATAACAGATAG
      CTAGCAAATGAGATAG
      CTAAGATAGCTATCAC
      GCGTCAGATTTCCTCG
      GAAAGGGATAGGCTAG
      CTTCGCAACCTCCCAG
      CTTACAAATCTGTTAG
      CTATCACTTGGAGTAG
      CCTGCTTTTCTGCTAG
      CTATCAATTGTATTAG
      CTACCAGAACTGGTAG
      CTGGCATAACAGATAG
      TGAGCAGTTCAGATAG
      CTGGCAGAACTGACAG
      CTACCCACCCTGTTCG
      CACCCTGTTCGTATCT
      CTCGATCTTCTGATAG
      TTTTCAGTTGGACTCG
      TAGCGAAAACATATCG
      CCATCTGACATGTAGG
      CCTGGAGACCAGGCTG
      CAATCAGAAATGTCCC
      CTAACAAAAGACATAG
      CCGTCAGTATTGTTAG
      CTGTGAAATCTGGCAG
      CTACCAGATCTGGCAG
      CTGTCGGTTCGCATAG
      CTGCCCATAATCCCCG
      CTATCAGTTCTGTAGT
      CTGTGAGATTTGGGAG
      CTACCTGTTTTGGTAG
      CTATCAGAATGAATAG
      CTATCCATTCTGATGG
      CCGACAAATCTGTGAC
      CTGGCCGATGGGCGCG
      CTATGCGTCCGGACAG
      CTATCCGTTCTGTCCC
      GTACCTGAACTGCCAG
      CTATCTGAAATGCGAG
      CTATCAATTGTATTAG
      CTAGCAAATGAGATAG
      CCATCTGACATGTAGG
      CCTGGAGACCAGGCTG
      CAATCAGAAATGTCCC
      GCGTCAGATTTCCTCG
      CTAAGATAGCTATCAC
      TTTTCAGTTGGACTCG
      TAGCGAAAACATATCG
      TAACTAGCAAATGAGATAGATT
      TCACATATCTGATAGCCTG
      ACCTACCAGAACTGGTAGTT
      ACCTGCCCGGAAGGGCAGGT
      CACTGCCAGATCTGGCAGTT
      ACCTACCAGATCTTGTAGTT
      ACCTGCCAGTTCTGGCAGGT
      ACCTGCTTTTCTGCTAGCT
      CCCTACCAGATCTGGCAGG

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      AATCTATCTCATTTGCTAGTTAT
      AACCTATGTCTTTTGTTAGCGTA
      GCCCTGTGCCCACGACCAGTTCG
      GACGCTGTCAAGCGCGCAGCCTT
      ACCCTATCTGTTATGCCAGCACC
      AATCTATCTCATTTGCTAGTTAT
      TTTGTGATAGCTATCTTAGCATT
      GCGGCGTCAGATTTCCTCGTCTA
      CGGGAAAGGGATAGGCTAGCGGC
      CGGCTTCGCAACCTCCCAGGAGA
      CAACTTACAAATCTGTTAGGTTC
      CAGCTACTCCAAGTGATAGCTAG
      CCACCTGCTTTTCTGCTAGCTAT
      GAGCTAATACAATTGATAGGGTG
      CACCTACCAGAACTGGTAGTTCT
      ACCCTATCTGTTATGCCAGCACC
      AACCTATCTGAACTGCTCAGGAG
      GACCTGTCAGTTCTGCCAGGTGG
      ATACGAACAGGGTGGGTAGCGGG
      CGGAGATACGAACAGGGTGGGTA
      CAACTCGATCTTCTGATAGGGTC
      AAACGAGTCCAACTGAAAAGGAC
      TTTCGATATGTTTTCGCTACGCC
      ATTCCTACATGTCAGATGGAAGC
      GTCCAGCCTGGTCTCCAGGCAGT
      GATGGGACATTTCTGATTGAACG
      AACCTATGTCTTTTGTTAGCGTA
      TTACCGTCAGTATTGTTAGTTGT
      TAACTGCCAGATTTCACAGGACG
      CGCCTGCCAGATCTGGTAGGCGG
      CCTCTGTCGGTTCGCATAGGTCG
      TTGCTGCCCATAATCCCCGGACA
      CCCACTACAGAACTGATAGTAGA
      CGCCTCCCAAATCTCACAGTTCG
      TAACTACCTGTTTTGGTAGGGTT
      TTCCTATCAGAATGAATAGCTAT
      AACCCATCAGAATGGATAGGGGT
      GCTGTCACAGATTTGTCGGAAAT
      TACCGCGCCCATCGGCCAGCCTG
      GACCTGTCCGGACGCATAGCAGG
      CGCGGGACAGAACGGATAGTTGA
      TTAGTACCTGAACTGCCAGCTTG
      CAGCTATCTGAAATGCGAGCGAT
      GAGCTAATACAATTGATAGGGTG
      AATCTATCTCATTTGCTAGTTAT
      ATTCCTACATGTCAGATGGAAGC
      GTCCAGCCTGGTCTCCAGGCAGT
      GATGGGACATTTCTGATTGAACG
      GCGGCGTCAGATTTCCTCGTCTA
      TTTGTGATAGCTATCTTAGCATT
      AAACGAGTCCAACTGAAAAGGAC
      TTTCGATATGTTTTCGCTACGCC
      AATCTATCTCATTTGCTAGTTAT
      GCGGTCACATATCTGATAGCCTG
      GAACTACCAGTTCTGGTAGGTGC
      TACCTGCCCGGAAGGGCAGGTTG
      CAACTGCCAGATCTGGCAGTGGC
      CAACTACAAGATCTGGTAGGTGC
      AACCTGCCAGAACTGGCAGGTAG
      CCACCTGCTTTTCTGCTAGCTAT
      AACCTGCCAGATCTGGTAGGGCG
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.