OmpR - UniProtKB: P0AA16 regulon and binding site collection of Salmonella enterica subsp. enterica serovar Typhi str. Ty2


Sites are listed as curated.

TAGGCCA
ATGTAAC
TGTTACA
TGTTAGT
CGCTAGA
ATGTAAC
TGTAACA
TGTAACA
TTGTTAC
TGTTACA
ATGTAAC
TAGGCCA
AGTTAGT
TGTTAGT
ATGTAAC
TGTAACA
TGTTACA
TAGGCCA
TTGTTAC
TGTTACA
GGCTAGA
ATGTAAC
TTGTTAC
TGTTACA
ATGTAAC
ATGTTAC
TGTTACA
ATGTTAC
AGTTAGT
ACGGCCT
TTGTAAC
TGTAACA
TGTAACA
TTGTAAC
TGTAACA
AACTAAC
ACGGCCT
TAGTCTA
TGTTACA
TGTTAGT
CGCTAGA
ATGTAAC
TGTAACA
TGTAACA
TTGTAAC
TGTAACA
AGTTAGT
AGTTAGT
ACGGCCT
TTGTAAC
TGTAACA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TAGGCCATG
CATGTAACA
TTTGTAACA
TTGTTAGTT
CATCTAGCG
AATGTAACA
AATGTAACA
CCTGTAACA
ATTGTTACA
TTTGTAACA
TATGTAACA
TAGGCCATG
CAGTTAGTT
TTGTTAGTT
CATGTAACA
CATGTAACA
TATGTAACA
TAGGCCATT
CTTGTTACA
CTTGTAACA
ATGGCTAGA
CATGTAACA
ATTGTTACA
TTTGTAACA
TATGTAACA
AATGTTACA
TATGTAACA
TATGTTACA
AAGTTAGTT
TAGGCCGTC
TTTGTAACA
TTTGTAACA
TGTGTAACA
TTTGTAACA
TTTGTAACA
TTGTTAGTT
TAGGCCGTT
TAGTCTAGA
TTTGTAACA
TTGTTAGTT
CATCTAGCG
AATGTAACA
AATGTAACA
CCTGTAACA
TTTGTAACA
TTTGTAACA
CAGTTAGTT
AAGTTAGTT
TAGGCCGTC
TTTGTAACA
TTTGTAACA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_004631.1 P0AA16 not specified TAGGCCA +[602084:602090] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) ackA (t0527) , t0528 , pta (t0526) , t0529 , t0530 , t0531 , t0532 , t0533
    ... ... ackA t0528 pta t0529 t0530 t0531 t0532 t0533
    437 23190111
    NC_004631.1 P0AA16 not specified ATGTAAC +[2117841:2117847] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) ompX (t2055) , ybiF (t2056)
    ... ... ompX ybiF
    437 23190111
    NC_004631.1 P0AA16 not specified TGTTACA +[4507828:4507834] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) t4354 , tviA (t4353) , t4355 , t4356
    ... ... t4354 tviA t4355 t4356
    437 23190111
    NC_004631.1 P0AA16 not specified TGTTAGT +[4507950:4507956] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) t4354 , tviA (t4353) , t4355 , t4356
    ... ... t4354 tviA t4355 t4356
    437 23190111
    NC_004631.1 P0AA16 not specified CGCTAGA +[4507994:4508000] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) t4354 , tviA (t4353) , t4355 , t4356
    ... ... t4354 tviA t4355 t4356
    437 23190111
    NC_004631.1 P0AA16 not specified ATGTAAC +[4511432:4511438] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) t4357 , t4356 , t4355 , t4354
    ... ... t4357 t4356 t4355 t4354
    437 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4511433:4511439] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) t4357 , t4356 , t4355 , t4354
    ... ... t4357 t4356 t4355 t4354
    437 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4511479:4511485] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) t4357 , t4356 , t4355 , t4354
    ... ... t4357 t4356 t4355 t4354
    437 23190111
    NC_004631.1 P0AA16 not specified TTGTTAC +[2208683:2208689] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) sdhC (t2144) , t2151 , t2150 , t2149 , nei (t2148) , t2147 , gltA (t2146) , t2145 , sdhB (t2141) , sdhA (t2142) , sdhD (t2143)
    ... ... sdhC t2151 t2150 t2149 nei t2147 gltA t2145 sdhB sdhA sdhD
    444 23190111
    NC_004631.1 P0AA16 not specified TGTTACA +[2208684:2208690] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) sdhC (t2144) , t2147 , nei (t2148) , t2149 , t2150 , t2151 , gltA (t2146) , t2145 , sdhB (t2141) , sdhA (t2142) , sdhD (t2143)
    ... ... sdhC t2147 nei t2149 t2150 t2151 gltA t2145 sdhB sdhA sdhD
    444 23190111
    NC_004631.1 P0AA16 not specified ATGTAAC +[2208758:2208764] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) sdhC (t2144) , t2145 , sdhD (t2143) , sdhA (t2142) , sdhB (t2141) , gltA (t2146) , t2147 , nei (t2148) , t2149 , t2150 , t2151
    ... ... sdhC t2145 sdhD sdhA sdhB gltA t2147 nei t2149 t2150 t2151
    444 23190111
    NC_004631.1 P0AA16 not specified TAGGCCA +[602084:602090] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t0528 , ackA (t0527) , pta (t0526) , t0529 , t0530 , t0531 , t0532 , t0533
    ... ... t0528 ackA pta t0529 t0530 t0531 t0532 t0533
    431 23190111
    NC_004631.1 P0AA16 not specified AGTTAGT +[750348:750354] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) galS (t0664) , yeiB (t0663) , folE (t0662) , mglB (t0665) , mglA (t0666) , mglC (t0667) , yeiA (t0668) , t0669
    ... ... galS yeiB folE mglB mglA mglC yeiA t0669
    431 23190111
    NC_004631.1 P0AA16 not specified TGTTAGT +[750355:750361] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) galS (t0664) , yeiB (t0663) , folE (t0662) , mglB (t0665) , mglA (t0666) , mglC (t0667) , yeiA (t0668) , t0669
    ... ... galS yeiB folE mglB mglA mglC yeiA t0669
    431 23190111
    NC_004631.1 P0AA16 not specified ATGTAAC +[985411:985417] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) ompS (t0883) , t0884 , yedJ (t0885) , dcm (t0886) , vsr (t0887) , yedA (t0888)
    ... ... ompS t0884 yedJ dcm vsr yedA
    431 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[985412:985418] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) ompS (t0883) , t0884 , yedJ (t0885) , dcm (t0886) , vsr (t0887) , yedA (t0888)
    ... ... ompS t0884 yedJ dcm vsr yedA
    431 23190111
    NC_004631.1 P0AA16 not specified TGTTACA +[1382276:1382282] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) tppB (t1320) , gst (t1319) , pdxY (t1318) , tyrS (t1317) , pdxH (t1316) , ydhA (t1315) , anmK (t1314) , nth (t1321) , ydgQ (t1322) , t1323 , rnfD (t1324) , t1325 , t1326 , t1327 , t1328 , t1329
    ... ... tppB gst pdxY tyrS pdxH ydhA anmK nth ydgQ t1323 rnfD t1325 t1326 t1327 t1328 t1329
    431 23190111
    NC_004631.1 P0AA16 not specified TAGGCCA +[1382436:1382442] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) tppB (t1320) , gst (t1319) , pdxY (t1318) , tyrS (t1317) , pdxH (t1316) , ydhA (t1315) , anmK (t1314) , nth (t1321) , ydgQ (t1322) , t1323 , rnfD (t1324) , t1325 , t1326 , t1327 , t1328 , t1329
    ... ... tppB gst pdxY tyrS pdxH ydhA anmK nth ydgQ t1323 rnfD t1325 t1326 t1327 t1328 t1329
    431 23190111
    NC_004631.1 P0AA16 not specified TTGTTAC +[1840329:1840335] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) csgB (t1777) , csgA (t1776) , csgC (t1775) , t1774 , t1773 , t1772 , mdoC (t1771) , csgD (t1778) , csgE (t1779) , csgF (t1780) , csgG (t1781) , t1782 , t1783 , t1784 , t1785
    ... ... csgB csgA csgC t1774 t1773 t1772 mdoC csgD csgE csgF csgG t1782 t1783 t1784 t1785
    431 23190111
    NC_004631.1 P0AA16 not specified TGTTACA +[1840330:1840336] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) csgB (t1777) , csgA (t1776) , csgC (t1775) , t1774 , t1773 , t1772 , mdoC (t1771) , csgD (t1778) , csgE (t1779) , csgF (t1780) , csgG (t1781) , t1782 , t1783 , t1784 , t1785
    ... ... csgB csgA csgC t1774 t1773 t1772 mdoC csgD csgE csgF csgG t1782 t1783 t1784 t1785
    431 23190111
    NC_004631.1 P0AA16 not specified GGCTAGA +[1840366:1840372] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) csgB (t1777) , csgA (t1776) , csgC (t1775) , t1774 , t1773 , t1772 , mdoC (t1771) , csgD (t1778) , csgE (t1779) , csgF (t1780) , csgG (t1781) , t1782 , t1783 , t1784 , t1785
    ... ... csgB csgA csgC t1774 t1773 t1772 mdoC csgD csgE csgF csgG t1782 t1783 t1784 t1785
    431 23190111
    NC_004631.1 P0AA16 not specified ATGTAAC +[2117841:2117847] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) ompX (t2055) , ybiF (t2056)
    ... ... ompX ybiF
    431 23190111
    NC_004631.1 P0AA16 not specified TTGTTAC +[2208683:2208689] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) sdhC (t2144) , sdhD (t2143) , sdhA (t2142) , sdhB (t2141) , t2145 , gltA (t2146) , t2147 , nei (t2148) , t2149 , t2150 , t2151
    ... ... sdhC sdhD sdhA sdhB t2145 gltA t2147 nei t2149 t2150 t2151
    431 23190111
    NC_004631.1 P0AA16 not specified TGTTACA +[2208684:2208690] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) sdhC (t2144) , sdhD (t2143) , sdhA (t2142) , sdhB (t2141) , t2145 , gltA (t2146) , t2147 , nei (t2148) , t2149 , t2150 , t2151
    ... ... sdhC sdhD sdhA sdhB t2145 gltA t2147 nei t2149 t2150 t2151
    431 23190111
    NC_004631.1 P0AA16 not specified ATGTAAC +[2208758:2208764] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t2145 , sdhC (t2144) , sdhD (t2143) , sdhA (t2142) , sdhB (t2141) , gltA (t2146) , t2147 , nei (t2148) , t2149 , t2150 , t2151
    ... ... t2145 sdhC sdhD sdhA sdhB gltA t2147 nei t2149 t2150 t2151
    431 23190111
    NC_004631.1 P0AA16 not specified ATGTTAC +[3094308:3094314] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) metK (t3002) , t05990 , galP (t3003) , t3004 , endA (t3005) , t3006 , gshB (t3007)
    ... ... metK t05990 galP t3004 endA t3006 gshB
    431 23190111
    NC_004631.1 P0AA16 not specified TGTTACA +[3094309:3094315] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) metK (t3002) , t05990 , galP (t3003) , t3004 , endA (t3005) , t3006 , gshB (t3007)
    ... ... metK t05990 galP t3004 endA t3006 gshB
    431 23190111
    NC_004631.1 P0AA16 not specified ATGTTAC +[3235015:3235021] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t3143 , ygjQ (t3142) , t3144
    ... ... t3143 ygjQ t3144
    431 23190111
    NC_004631.1 P0AA16 not specified AGTTAGT +[4011262:4011268] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t3884 , t3883 , t3882 , t3881 , t3880 , yhjW (t3879) , dppA (t3885)
    ... ... t3884 t3883 t3882 t3881 t3880 yhjW dppA
    431 23190111
    NC_004631.1 P0AA16 not specified ACGGCCT +[4011294:4011300] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t3884 , t3883 , t3882 , t3881 , t3880 , yhjW (t3879) , dppA (t3885)
    ... ... t3884 t3883 t3882 t3881 t3880 yhjW dppA
    431 23190111
    NC_004631.1 P0AA16 not specified TTGTAAC +[4011315:4011321] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t3884 , t3883 , t3882 , t3881 , t3880 , yhjW (t3879) , dppA (t3885)
    ... ... t3884 t3883 t3882 t3881 t3880 yhjW dppA
    431 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4011316:4011322] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t3884 , t3883 , t3882 , t3881 , t3880 , yhjW (t3879) , dppA (t3885)
    ... ... t3884 t3883 t3882 t3881 t3880 yhjW dppA
    431 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4045076:4045082] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) yhjE (t3908) , t3907 , yhjH (t3906) , yhjD (t3909) , yhjC (t3910)
    ... ... yhjE t3907 yhjH yhjD yhjC
    431 23190111
    NC_004631.1 P0AA16 not specified TTGTAAC +[4154805:4154811] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) greB (t4003) , t4002 , ompR (t4004) , envZ (t4005) , pckA (t4006)
    ... ... greB t4002 ompR envZ pckA
    431 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4154806:4154812] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) greB (t4003) , t4002 , ompR (t4004) , envZ (t4005) , pckA (t4006)
    ... ... greB t4002 ompR envZ pckA
    431 23190111
    NC_004631.1 P0AA16 not specified AACTAAC +[4507572:4507578] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) tviA (t4353) , t4354 , t4355 , t4356
    ... ... tviA t4354 t4355 t4356
    431 23190111
    NC_004631.1 P0AA16 not specified ACGGCCT +[4507612:4507618] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) tviA (t4353) , t4354 , t4355 , t4356
    ... ... tviA t4354 t4355 t4356
    431 23190111
    NC_004631.1 P0AA16 not specified TAGTCTA +[4507697:4507703] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) tviA (t4353) , t4354 , t4355 , t4356
    ... ... tviA t4354 t4355 t4356
    431 23190111
    NC_004631.1 P0AA16 not specified TGTTACA +[4507828:4507834] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) tviA (t4353) , t4354 , t4355 , t4356
    ... ... tviA t4354 t4355 t4356
    431 23190111
    NC_004631.1 P0AA16 not specified TGTTAGT +[4507950:4507956] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) tviA (t4353) , t4354 , t4355 , t4356
    ... ... tviA t4354 t4355 t4356
    431 23190111
    NC_004631.1 P0AA16 not specified CGCTAGA +[4507994:4508000] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) tviA (t4353) , t4354 , t4355 , t4356
    ... ... tviA t4354 t4355 t4356
    431 23190111
    NC_004631.1 P0AA16 not specified ATGTAAC +[4511432:4511438] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t4356 , t4355 , t4354 , t4357
    ... ... t4356 t4355 t4354 t4357
    431 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4511433:4511439] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t4356 , t4355 , t4354 , t4357
    ... ... t4356 t4355 t4354 t4357
    431 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4511479:4511485] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details Motif-discovery (ECO:0005558) t4356 , t4355 , t4354 , t4357
    ... ... t4356 t4355 t4354 t4357
    431 23190111
    NC_004631.1 P0AA16 not specified TTGTAAC +[4154805:4154811] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) ompR (t4004) , greB (t4003) , t4002 , envZ (t4005) , pckA (t4006)
    ... ... ompR greB t4002 envZ pckA
    446 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4154806:4154812] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) ompR (t4004) , greB (t4003) , t4002 , envZ (t4005) , pckA (t4006)
    ... ... ompR greB t4002 envZ pckA
    446 23190111
    NC_004631.1 P0AA16 not specified AGTTAGT +[750348:750354] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) mglB (t0665) , galS (t0664) , yeiB (t0663) , folE (t0662) , mglA (t0666) , mglC (t0667) , yeiA (t0668) , t0669
    ... ... mglB galS yeiB folE mglA mglC yeiA t0669
    447 23190111
    NC_004631.1 P0AA16 not specified AGTTAGT +[4011262:4011268] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) dppA (t3885) , t3884 , t3883 , t3882 , t3881 , t3880 , yhjW (t3879)
    ... ... dppA t3884 t3883 t3882 t3881 t3880 yhjW
    447 23190111
    NC_004631.1 P0AA16 not specified ACGGCCT +[4011294:4011300] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) dppA (t3885) , t3884 , t3883 , t3882 , t3881 , t3880 , yhjW (t3879)
    ... ... dppA t3884 t3883 t3882 t3881 t3880 yhjW
    447 23190111
    NC_004631.1 P0AA16 not specified TTGTAAC +[4011315:4011321] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) dppA (t3885) , t3884 , t3883 , t3882 , t3881 , t3880 , yhjW (t3879)
    ... ... dppA t3884 t3883 t3882 t3881 t3880 yhjW
    447 23190111
    NC_004631.1 P0AA16 not specified TGTAACA +[4011316:4011322] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details RNA-Seq (ECO:0005664) dppA (t3885) , t3884 , t3883 , t3882 , t3881 , t3880 , yhjW (t3879)
    ... ... dppA t3884 t3883 t3882 t3881 t3880 yhjW
    447 23190111

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TAGGCCA
    ATGTAAC
    TGTTACA
    TGTTAGT
    CGCTAGA
    ATGTAAC
    TGTAACA
    TGTAACA
    TTGTTAC
    TGTTACA
    ATGTAAC
    TAGGCCA
    AGTTAGT
    TGTTAGT
    ATGTAAC
    TGTAACA
    TGTTACA
    TAGGCCA
    TTGTTAC
    TGTTACA
    GGCTAGA
    ATGTAAC
    TTGTTAC
    TGTTACA
    ATGTAAC
    ATGTTAC
    TGTTACA
    ATGTTAC
    AGTTAGT
    ACGGCCT
    TTGTAAC
    TGTAACA
    TGTAACA
    TTGTAAC
    TGTAACA
    AACTAAC
    ACGGCCT
    TAGTCTA
    TGTTACA
    TGTTAGT
    CGCTAGA
    ATGTAAC
    TGTAACA
    TGTAACA
    TTGTAAC
    TGTAACA
    AGTTAGT
    AGTTAGT
    ACGGCCT
    TTGTAAC
    TGTAACA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TAGGCCATG
    CATGTAACA
    TTTGTAACA
    TTGTTAGTT
    CATCTAGCG
    AATGTAACA
    AATGTAACA
    CCTGTAACA
    ATTGTTACA
    TTTGTAACA
    TATGTAACA
    TAGGCCATG
    CAGTTAGTT
    TTGTTAGTT
    CATGTAACA
    CATGTAACA
    TATGTAACA
    TAGGCCATT
    CTTGTTACA
    CTTGTAACA
    ATGGCTAGA
    CATGTAACA
    ATTGTTACA
    TTTGTAACA
    TATGTAACA
    AATGTTACA
    TATGTAACA
    TATGTTACA
    AAGTTAGTT
    TAGGCCGTC
    TTTGTAACA
    TTTGTAACA
    TGTGTAACA
    TTTGTAACA
    TTTGTAACA
    TTGTTAGTT
    TAGGCCGTT
    TAGTCTAGA
    TTTGTAACA
    TTGTTAGTT
    CATCTAGCG
    AATGTAACA
    AATGTAACA
    CCTGTAACA
    TTTGTAACA
    TTTGTAACA
    CAGTTAGTT
    AAGTTAGTT
    TAGGCCGTC
    TTTGTAACA
    TTTGTAACA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.