Researchers used CHiP-seq to discover OmpR binding sites; binding sequences were determined from enriched sequences using the motif finding algorithm YMF. Regulation was assayed in a previous paper (19609351) with both a microarray and RNA-seq.
Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.
|Site sequence||Regulated genes||Gene diagram||Experimental techniques||TF function||TF type|