Zur - UniProtKB: Q8NNC4 regulon and binding site collection of Corynebacterium glutamicum ATCC 13032


Sites are listed as curated.

TAATGATAACGGTTATCATTT
TGTTGACATCCTTTTTCAATA
TATTGAAAATGATTCCCAAAA
AAATGATAACCGTTATCATTA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TAATGATAACGGTTATCATTT
TATTGAAAAAGGATGTCAACA
TATTGAAAATGATTCCCAAAA
TAATGATAACGGTTATCATTT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003450.3 Q8NNC4 not specified TAATGATAACGGTTATCATTT -[29969:29989] Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) NCgl0027 , NCgl0031 , NCgl0032 , NCgl0026 , NCgl0028 , NCgl0029 , NCgl0030
    ... ... NCgl0027 NCgl0031 NCgl0032 NCgl0026 NCgl0028 NCgl0029 NCgl0030
    305 20055984
    NC_003450.3 Q8NNC4 not specified TGTTGACATCCTTTTTCAATA +[2796827:2796847] Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) NCgl2539 , NCgl2541 , NCgl2540 , NCgl2537 , NCgl2538
    ... ... NCgl2539 NCgl2541 NCgl2540 NCgl2537 NCgl2538
    305 20055984
    NC_003450.3 Q8NNC4 not specified TATTGAAAATGATTCCCAAAA -[711618:711638] Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) NCgl0662 , NCgl0663
    ... ... NCgl0662 NCgl0663
    305 20055984
    NC_003450.3 Q8NNC4 not specified AAATGATAACCGTTATCATTA +[29969:29989] Experimental technique details Comparative genomics search (ECO:0005622) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) NCgl0028 , NCgl0032 , NCgl0031 , NCgl0030 , NCgl0029 , NCgl0026 , NCgl0027
    ... ... NCgl0028 NCgl0032 NCgl0031 NCgl0030 NCgl0029 NCgl0026 NCgl0027
    305 20055984

    Zur - UniProtKB: Q8NNC4 regulon and binding site collection of Corynebacterium glutamicum R


    Sites are listed as curated.

    TTTCAATAAGCTTTCAATAAG
    TTTTAATAAGCTTTCAATAAG
    TGTTGACAGCTGTTTTCAATA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ATTTTCAATAAGCTTTCAATAAG
    ATTTTTAATAAGCTTTCAATAAG
    TATTGAAAACAGCTGTCAACATG

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_009342.1 Q8NNC4 not specified TTTCAATAAGCTTTCAATAAG +[1489202:1489222] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) cgR_1359 , cgR_1360 , cgR_1361
      ... ... cgR_1359 cgR_1360 cgR_1361
      1081 23061624
      NC_009342.1 Q8NNC4 not specified TTTTAATAAGCTTTCAATAAG +[165497:165517] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) cgR_0148
      ... ... cgR_0148
      1081 23061624
      NC_009342.1 Q8NNC4 not specified TGTTGACAGCTGTTTTCAATA +[2800982:2801002] Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) cgR_2534 , cgR_2535 , cgR_2536 , cgR_2537
      ... ... cgR_2534 cgR_2535 cgR_2536 cgR_2537
      1081 23061624

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      TAATGATAACGGTTATCATTT
      TGTTGACATCCTTTTTCAATA
      TATTGAAAATGATTCCCAAAA
      AAATGATAACCGTTATCATTA
      TTTCAATAAGCTTTCAATAAG
      TTTTAATAAGCTTTCAATAAG
      TGTTGACAGCTGTTTTCAATA

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      TAATGATAACGGTTATCATTTTC
      TATTGAAAAAGGATGTCAACATG
      TATTGAAAATGATTCCCAAAAGG
      TAATGATAACGGTTATCATTTTC
      ATTTTCAATAAGCTTTCAATAAG
      ATTTTTAATAAGCTTTCAATAAG
      TATTGAAAACAGCTGTCAACATG
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.