CmeR - UniProtKB: Q0PBE2 regulon and binding site collection of Campylobacter jejuni subsp. jejuni 81-176


Sites are listed as curated.

TGTAATAAATATTACA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGTAATAAATATTACA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_008787.1 Q0PBE2 not specified TGTAATAAATATTACA -[340863:340878] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) cmeA (CJJ81176_0390) , cmeB (CJJ81176_0389) , cmeC (CJJ81176_0388)
    ... ... cmeA cmeB cmeC
    634 16936021

    CmeR - UniProtKB: Q0PBE2 regulon and binding site collection of Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819


    Sites are listed as curated.

    TGTAATATTAGTTACA
    TGTAATTTAATTACA
    TGTAATAAAAATTACA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGTAATATTAGTTACA
    ATGTAATTTAATTACA
    TGTAATTTTTATTACA

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_002163.1 Q0PBE2 not specified TGTAATATTAGTTACA -[525012:525027] Experimental technique details Beta-gal reporter assay - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) Cj0561c , dnaB (Cj0562) , Cj0563 , Cj0564 , Cj0565 , Cj0566 , Cj0567
      ... ... Cj0561c dnaB Cj0563 Cj0564 Cj0565 Cj0566 Cj0567
      636 18178742
      NC_002163.1 Q0PBE2 not specified TGTAATTTAATTACA -[524989:525003] Experimental technique details Beta-gal reporter assay - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) Cj0561c , dnaB (Cj0562) , Cj0563 , Cj0564 , Cj0565 , Cj0566 , Cj0567
      ... ... Cj0561c dnaB Cj0563 Cj0564 Cj0565 Cj0566 Cj0567
      636 18178742
      NC_002163.1 Q0PBE2 dimer TGTAATAAAAATTACA -[336851:336866] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) cmeA (Cj0367c) , cmeB (Cj0366c) , cmeC (Cj0365c)
      ... ... cmeA cmeB cmeC
      637 17166222

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      TGTAATAAATATTACA
      TGTAATATTAGTTACA
      TGTAATTTAATTACA
      TGTAATAAAAATTACA

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      TGTAATATTTATTACA
      TGTAATATTAGTTACA
      ATGTAATTTAATTACA
      TGTAATTTTTATTACA
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.