OmpR - UniProtKB: A1JSH8 regulon and binding site collection of Yersinia enterocolitica subsp. enterocolitica 8081


Sites are listed as curated.

CTGACTTCTGGCTATTT
CTAATATTTTGTAAGAAAA
TTTATTTTTGTAAGTTCTG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTGACTTCTGGCTATTTTTT
CTAATATTTTGTAAGAAAAG
TTTTATTTTTGTAAGTTCTG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_008800.1 A1JSH8 not specified CTGACTTCTGGCTATTT -[2777421:2777437] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) flhC (YE2580) , flhD (YE2581) , YE2583
    ... ... flhC flhD YE2583
    58 20830609
    NC_008800.1 A1JSH8 monomer CTAATATTTTGTAAGAAAA -[2777240:2777258] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) flhC (YE2580) , flhD (YE2581) , YE2583
    ... ... flhC flhD YE2583
    59 20830609
    NC_008800.1 A1JSH8 not specified TTTATTTTTGTAAGTTCTG -[2757915:2757933] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) invA (YE2564) , flgN (YE2563) , flgM (YE2562) , flhE (YE2565) , flhA (YE2566) , flhB (YE2567)
    ... ... invA flgN flgM flhE flhA flhB
    450 17660406

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CTGACTTCTGGCTATTT
    CTAATATTTTGTAAGAAAA
    TTTATTTTTGTAAGTTCTG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTGACTTCTGGCTATTTTTT
    CTAATATTTTGTAAGAAAAG
    TTTTATTTTTGTAAGTTCTG
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.