CcpA - UniProtKB: A0A0C6FYN7 regulon and binding site collection of Streptococcus pyogenes HSC5


Sites are listed as curated.

TGTAAGCGCTAACA
TGATAACGTTATAA
TGAGAACGGTCCCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGTAAGCGCTAACA
TGATAACGTTATAA
TGAGAACGGTCCCA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_021807.1 A0A0C6FYN7 dimer TGTAAGCGCTAACA +[338114:338127] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details MALDI-TOF Mass Spectrometry (ECO:0005527) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) L897_01860 , L897_01855 , L897_01850 , L897_01845 , L897_01840 , L897_01835
    ... ... L897_01860 L897_01855 L897_01850 L897_01845 L897_01840 L897_01835
    870 19841076
    NC_021807.1 A0A0C6FYN7 dimer TGATAACGTTATAA -[949223:949236] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) L897_04845
    ... ... L897_04845
    870 19841076
    NC_021807.1 A0A0C6FYN7 dimer TGAGAACGGTCCCA -[1682036:1682049] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) L897_08645 , L897_08650 , L897_08640 , L897_08655
    ... ... L897_08645 L897_08650 L897_08640 L897_08655
    870 19841076

    CcpA - UniProtKB: A0A0C6FYN7 regulon and binding site collection of Streptococcus pyogenes MGAS10750


    Sites are listed as curated.

    TGAAAACTTTTTCA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGAAAACTTTTTCA

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_008024.1 A0A0C6FYN7 not specified TGAAAACTTTTTCA +[425658:425671] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) ccpA (MGAS10750_Spy0437) , pepQ (MGAS10750_Spy0436) , MGAS10750_Spy0435 , gloA (MGAS10750_Spy0434) , MGAS10750_Spy0433 , MGAS10750_Spy0438 , MGAS10750_Spy0439
      ... ... ccpA pepQ MGAS10750_Spy0435 gloA MGAS10750_Spy0433 MGAS10750_Spy0438 MGAS10750_Spy0439
      860 15345406

      CcpA - UniProtKB: A0A0C6FYN7 regulon and binding site collection of Streptococcus pyogenes MGAS5005


      Sites are listed as curated.

      TGTAAACCCTTTCT

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      TGTAAACCCTTTCT

      For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

        Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
        NC_007297.1 A0A0C6FYN7 not specified TGTAAACCCTTTCT -[559518:559531] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) sagA (M5005_Spy_0562)
        ... ... sagA
        872 18490461

        All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


        Sites are listed as curated.

        TGAAAACTTTTTCA
        TGTAAGCGCTAACA
        TGATAACGTTATAA
        TGAGAACGGTCCCA
        TGTAAACCCTTTCT

        Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

        TGAAAACTTTTTCA
        TGTAAGCGCTAACA
        TGATAACGTTATAA
        TGAGAACGGTCCCA
        TGTAAACCCTTTCT
        Download data in FASTA format.
        Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
        Download raw data in TSV format. All reported sites are exported individually.
        Download data in Attribute-Relation File Format (ARFF).
        Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
        Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
        Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.