CovR - UniProtKB: Q8DY68 regulon and binding site collection of Streptococcus agalactiae A909


Sites are listed as curated.

TATTTTAAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TATTTTAAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_007432.1 Q8DY68 not specified TATTTTAAT -[1631284:1631292] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) csrR (SAK_1639) , SAK_1638 , nrdR (SAK_1637) , SAK_1636 , dnaI (SAK_1635) , engA (SAK_1634)
    ... ... csrR SAK_1638 nrdR SAK_1636 dnaI engA
    953 20497331

    CovR - UniProtKB: Q8DY68 regulon and binding site collection of Streptococcus agalactiae NEM316


    Sites are listed as curated.

    TATTTTAAT
    TATTTTAAT
    TATTTTAAT
    TTTTTTAAT
    TTTATTAAT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TATTTTAAT
    TATTTTAAT
    TATTTTAAT
    TTTTTTAAT
    TTTATTAAT

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_004368.1 Q8DY68 not specified TATTTTAAT +[2091831:2091839] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) gbs2018 , nusG (gbs2017)
      ... ... gbs2018 nusG
      912 15554966
      NC_004368.1 Q8DY68 not specified TATTTTAAT -[2091917:2091925] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) gbs2018 , nusG (gbs2017)
      ... ... gbs2018 nusG
      912 15554966
      NC_004368.1 Q8DY68 not specified TATTTTAAT +[660784:660792] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) cylX (gbs0644) , gbs0643 , cylD (gbs0645) , cylG (gbs0646) , acpC (gbs0647) , gbs0648 , cylA (gbs0649) , cylB (gbs0650) , cylE (gbs0651) , cylF (gbs0652) , cylI (gbs0653) , cylJ (gbs0654) , cylK (gbs0655) , gbs0656 , gbs0657 , gbs0658
      ... ... cylX gbs0643 cylD cylG acpC gbs0648 cylA cylB cylE cylF cylI cylJ cylK gbs0656 gbs0657 gbs0658
      912 15554966
      NC_004368.1 Q8DY68 not specified TTTTTTAAT +[1961756:1961764] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) gbs1895
      ... ... gbs1895
      912 15554966
      NC_004368.1 Q8DY68 not specified TTTATTAAT +[1961778:1961786] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) gbs1895
      ... ... gbs1895
      912 15554966

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      TATTTTAAT
      TATTTTAAT
      TATTTTAAT
      TTTTTTAAT
      TTTATTAAT
      TATTTTAAT

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      TATTTTAAT
      TATTTTAAT
      TATTTTAAT
      TTTTTTAAT
      TTTATTAAT
      TATTTTAAT
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.