PilR - UniProtKB: Q74D24 regulon and binding site collection of Geobacter sulfurreducens PCA


Sites are listed as curated.

GGCAAAATTTGGCATG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GGCAAAATTTGGCATG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002939.5 Q74D24 not specified GGCAAAATTTGGCATG +[1642063:1642078] Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Regular expression search (ECO:0005662) pilA-N (GSU1496) , pilR (GSU1495) , pilS (GSU1494) , pilC (GSU1493) , pilT-4 (GSU1492) , pilB (GSU1491) , aroE (GSU1490) , GSU1489 , GSU1488 , ribF (GSU1487) , tatC (GSU1486) , rnr (GSU1485) , pilA-C (GSU1497) , xapA (GSU1498) , xapB (GSU1499) , GSU1500 , xapD (GSU1501) , xapE (GSU1502) , xapF (GSU1503) , xapG (GSU1504) , xapH (GSU1505) , xapI (GSU1506) , xapJ (GSU1507) , GSU1508 , GSU1509 , GSU1510 , GSU1510.1 , GSU1511 , GSU1512 , GSU1513 , GSU1514 , GSUR026 , thrS (GSU1515) , infC (GSU1516) , rpmI (GSU1517) , rplT (GSU1518) , pheS (GSU1519) , pheT (GSU1520) , ihfA-1 (GSU1521) , GSU1522 , GSUR027 , surE (GSU1523) , pcm (GSU1524) , rpoS (GSU1525) , apt (GSU1526) , GSUR028
    ... ... pilA-N pilR pilS pilC pilT-4 pilB aroE GSU1489 GSU1488 ribF tatC rnr pilA-C xapA xapB GSU1500 xapD xapE xapF xapG xapH xapI xapJ GSU1508 GSU1509 GSU1510 GSU1510.1 GSU1511 GSU1512 GSU1513 GSU1514 GSUR026 thrS infC rpmI rplT pheS pheT ihfA-1 GSU1522 GSUR027 surE pcm rpoS apt GSUR028
    449 20708667

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GGCAAAATTTGGCATG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GGCAAAATTTGGCATG
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.