LexA - UniProtKB: P73722 regulon and binding site collection of Synechocystis sp. PCC 6803


Sites are listed as curated.

TAGTCCTAGAGTCCTA
AACAACACCCAGAACCTAGTAACTAGTTCGACTTACCCTCCTTTCTTCG
CTAATACTTTGACTA
CTAAATACATTCCTA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

ATGTAATATCTCCTATAGGAATGTATTTAGGACTCTAGGACTATTTTAA
AACAACACCCAGAACCTAGTAACTAGTTCGACTTACCCTCCTTTCTTCG
TATCCGAAATTATTTAACTTTTCCATGACTAATACTTTGACTAGTACCT
TGACTGGGTTTAAAATAGTCCTAGAGTCCTAAATACATTCCTATAGGAG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_020286.1 P73722 dimer TAGTCCTAGAGTCCTA -[1317825:1317840] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) lexA (MYO_112040) , sdhB (MYO_112050)
    ... ... lexA sdhB
    302 14652736
    NC_020286.1 P73722 dimer AACAACACCCAGAACCTAGTAACTAGTTCGACTTACCCTCCTTTCTTCG -[1677675:1677723] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details MALDI-TOF Mass Spectrometry (ECO:0005527) MYO_115360 , MYO_115370 , hoxH (MYO_115290) , MYO_115300 , MYO_115310 , hoxY (MYO_115320) , hoxU (MYO_115330) , MYO_115340 , hoxF (MYO_115350)
    ... ... MYO_115360 MYO_115370 hoxH MYO_115300 MYO_115310 hoxY hoxU MYO_115340 hoxF
    375 16238629
    NC_020286.1 P73722 dimer CTAATACTTTGACTA +[2884915:2884929] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) argC (MYO_126200) , MYO_126180 , deaD (MYO_126190)
    ... ... argC MYO_126180 deaD
    367 18555801
    NC_020286.1 P73722 dimer CTAAATACATTCCTA -[1317813:1317827] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) sdhB (MYO_112050) , lexA (MYO_112040)
    ... ... sdhB lexA
    366 18555801

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TAGTCCTAGAGTCCTA
    AACAACACCCAGAACCTAGTAACTAGTTCGACTTACCCTCCTTTCTTCG
    CTAATACTTTGACTA
    CTAAATACATTCCTA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ATGTAATATCTCCTATAGGAATGTATTTAGGACTCTAGGACTATTTTAA
    AACAACACCCAGAACCTAGTAACTAGTTCGACTTACCCTCCTTTCTTCG
    TATCCGAAATTATTTAACTTTTCCATGACTAATACTTTGACTAGTACCT
    TGACTGGGTTTAAAATAGTCCTAGAGTCCTAAATACATTCCTATAGGAG
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.