Fur - UniProtKB: P33086 regulon and binding site collection of Yersinia pestis biovar Microtus str. 91001


Sites are listed as curated.

AACAATAATAATTCCCAAC
AATGATAATCATAACCAAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AACAATAATAATTCCCAAC
AATGATAATCATAACCAAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_005810.1 P33086 not specified AACAATAATAATTCCCAAC +[4278358:4278376] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details PSSM site search (ECO:0005659) hmsT (YP_3756) , proP32 (YP_3755)
    ... ... hmsT proP32
    314 23285021
    NC_005810.1 P33086 not specified AATGATAATCATAACCAAT +[4278181:4278199] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details PSSM site search (ECO:0005659) hmsT (YP_3756) , proP32 (YP_3755) , YP_t73
    ... ... hmsT proP32 YP_t73
    314 23285021

    Fur - UniProtKB: P33086 regulon and binding site collection of Yersinia pestis CO92


    Sites are listed as curated.

    ACTGAGAATTATTTTCATG
    ATTGATAATCATTTTCATT
    AATGATAATCATTTTTATT
    AACGATAAGAATTCTTAAT
    AATGATAATCGTTTGCAAT
    AATGATAATCAAAATCGTT
    AGTGGTTATCATTATCAAT
    AATAATAATCATTTGCATT
    AATGCTTATCATAAGGATT
    AATAATAATTATTAACAAT
    AATAATAACCATTATCAAT
    AATAATAACCATTATCAAT
    AATGATAATTGATATCATT
    AATAATTATCAAAACCGTT
    AATAAAAATCATTAGCATT
    AATGATTATCATAATCACT
    ACTGATAGTCGTTATCATT
    AATGATAATTACTATCAAT
    AATAATGATAGTTATCAAT
    AATAAAACTCATTCTTATT
    AATGATAATCATAACCAAT
    AGTGGTTATCATTATCAAT
    ATTGATAATCACTATCATT
    CCTGATAACGATTTTCATT
    AGTGATAATTATTATCACT
    GATGATAATCATAGGCCAC
    CTTGATAATTATTCTCATT
    AATAAGAATTATTATCATT
    AATGATCATAATTTCAAAT
    CATGATAATCATTCACATT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ACTGAGAATTATTTTCATG
    ATTGATAATCATTTTCATT
    AATGATAATCATTTTTATT
    ATTAAGAATTCTTATCGTT
    ATTGCAAACGATTATCATT
    AATGATAATCAAAATCGTT
    ATTGATAATGATAACCACT
    AATGCAAATGATTATTATT
    AATCCTTATGATAAGCATT
    ATTGTTAATAATTATTATT
    ATTGATAATGGTTATTATT
    ATTGATAATGGTTATTATT
    AATGATAATTGATATCATT
    AATAATTATCAAAACCGTT
    AATGCTAATGATTTTTATT
    AATGATTATCATAATCACT
    ACTGATAGTCGTTATCATT
    ATTGATAGTAATTATCATT
    ATTGATAACTATCATTATT
    AATAAGAATGAGTTTTATT
    AATGATAATCATAACCAAT
    ATTGATAATGATAACCACT
    AATGATAGTGATTATCAAT
    CCTGATAACGATTTTCATT
    AGTGATAATTATTATCACT
    GTGGCCTATGATTATCATC
    AATGAGAATAATTATCAAG
    AATAAGAATTATTATCATT
    AATGATCATAATTTCAAAT
    AATGTGAATGATTATCATG

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_003143.1 P33086 dimer ACTGAGAATTATTTTCATG +[144707:144725] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) feoA (YPO0133) , YPO0134
      ... ... feoA YPO0134
      89 18281395
      NC_003143.1 P33086 dimer ATTGATAATCATTTTCATT +[2738702:2738720] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) yfeA (YPO2439) , yfeB (YPO2440) , yfeC (YPO2441) , yfeD (YPO2442) , YPO2438
      ... ... yfeA yfeB yfeC yfeD YPO2438
      89 18281395
      NC_003143.1 P33086 dimer AATGATAATCATTTTTATT +[3305577:3305595] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) sfuA (YPO2958) , mltB (YPO2957)
      ... ... sfuA mltB
      89 18281395
      NC_003143.1 P33086 dimer AACGATAAGAATTCTTAAT +[180729:180747] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO0164 , YPO0163
      ... ... YPO0164 YPO0163
      89 18281395
      NC_003143.1 P33086 dimer AATGATAATCGTTTGCAAT +[1140180:1140198] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO1011 , YPO1009
      ... ... YPO1011 YPO1009
      89 18281395
      NC_003143.1 P33086 dimer AATGATAATCAAAATCGTT -[1053651:1053669] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO0955 , YPO0956 , mltC (YPO0954)
      ... ... YPO0955 YPO0956 mltC
      89 18281395
      NC_003143.1 P33086 dimer AGTGGTTATCATTATCAAT -[1097471:1097489] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) iucA (YPO0989) , iucB (YPO0991) , iucC (YPO0992) , iucD (YPO0993) , YPO0988
      ... ... iucA iucB iucC iucD YPO0988
      89 18281395
      NC_003143.1 P33086 dimer AATAATAATCATTTGCATT -[1753260:1753278] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO1538 , galU (YPO1539)
      ... ... YPO1538 galU
      89 18281395
      NC_003143.1 P33086 dimer AATGCTTATCATAAGGATT -[1996837:1996855] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fcuA (YPO1753) , YPO1751 , y1093 (YPO1750)
      ... ... fcuA YPO1751 y1093
      89 18281395
      NC_003143.1 P33086 dimer AATAATAATTATTAACAAT +[2162203:2162221] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) irp2 (YPO1911) , ybtA (YPO1912)
      ... ... irp2 ybtA
      89 18281395
      NC_003143.1 P33086 dimer AATAATAACCATTATCAAT -[2163374:2163392] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) ybtA (YPO1912) , irp6 (YPO1913) , irp7 (YPO1914) , irp8 (YPO1915) , ybtS (YPO1916)
      ... ... ybtA irp6 irp7 irp8 ybtS
      89 18281395
      NC_003143.1 P33086 dimer AATAATAACCATTATCAAT -[2163374:2163392] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) irp6 (YPO1913) , irp7 (YPO1914) , irp8 (YPO1915) , ybtS (YPO1916) , ybtA (YPO1912)
      ... ... irp6 irp7 irp8 ybtS ybtA
      89 18281395
      NC_003143.1 P33086 dimer AATGATAATTGATATCATT -[3728388:3728406] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO3340 , yhjA (YPO3342)
      ... ... YPO3340 yhjA
      89 18281395
      NC_003143.1 P33086 dimer AATAATTATCAAAACCGTT +[3788237:3788255] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) fhuC (YPO3392) , fhuD (YPO3391) , fhuB (YPO3390) , mrcB (YPO3393)
      ... ... fhuC fhuD fhuB mrcB
      89 18281395
      NC_003143.1 P33086 dimer AATAAAAATCATTAGCATT +[4537643:4537661] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO4022 , YPO4023 , YPO4024 , YPO4025 , YPO4021 , YPO4020 , YPO4026
      ... ... YPO4022 YPO4023 YPO4024 YPO4025 YPO4021 YPO4020 YPO4026
      89 18281395
      NC_003143.1 P33086 dimer AATGATTATCATAATCACT +[4408644:4408662] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO3923 , argH (YPO3924)
      ... ... YPO3923 argH
      89 18281395
      NC_003143.1 P33086 dimer ACTGATAGTCGTTATCATT -[285364:285382] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) hmuR (YPO0283) , YPO0284 , YPO0285 , YPO0286
      ... ... hmuR YPO0284 YPO0285 YPO0286
      89 18281395
      NC_003143.1 P33086 dimer AATGATAATTACTATCAAT +[744606:744624] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO0682 , YPO0683 , metC (YPO0681)
      ... ... YPO0682 YPO0683 metC
      89 18281395
      NC_003143.1 P33086 dimer AATAATGATAGTTATCAAT +[2469133:2469151] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) tonB (YPO2193) , YPO2192 , y1062 (YPO2194)
      ... ... tonB YPO2192 y1062
      89 18281395
      NC_003143.1 P33086 dimer AATAAAACTCATTCTTATT +[220439:220457] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) bfd (YPO0205) , tnp (YPO0204)
      ... ... bfd tnp
      89 18281395
      NC_003143.1 P33086 dimer AATGATAATCATAACCAAT -[446864:446882] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO0426 , hmsT (YPO0425)
      ... ... YPO0426 hmsT
      89 18281395
      NC_003143.1 P33086 dimer AGTGGTTATCATTATCAAT -[1097471:1097489] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO0988 , iucA (YPO0989) , iucB (YPO0991) , iucC (YPO0992) , iucD (YPO0993)
      ... ... YPO0988 iucA iucB iucC iucD
      89 18281395
      NC_003143.1 P33086 dimer ATTGATAATCACTATCATT +[1738307:1738325] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO1528 , YPO1527
      ... ... YPO1528 YPO1527
      89 18281395
      NC_003143.1 P33086 dimer CCTGATAACGATTTTCATT -[2433162:2433180] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) YPO2163 , sppA (YPO2162)
      ... ... YPO2163 sppA
      89 18281395
      NC_003143.1 P33086 dimer AGTGATAATTATTATCACT -[2701890:2701908] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) sufA (YPO2404) , YPO2403 , YPO2405
      ... ... sufA YPO2403 YPO2405
      89 18281395
      NC_003143.1 P33086 dimer GATGATAATCATAGGCCAC -[2979811:2979829] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) nrdH (YPO2651) , nrdI (YPO2650) , asr (YPO2652)
      ... ... nrdH nrdI asr
      89 18281395
      NC_003143.1 P33086 dimer CTTGATAATTATTCTCATT -[3330679:3330697] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) mntH (YPO2982) , cru (YPO2983)
      ... ... mntH cru
      89 18281395
      NC_003143.1 P33086 dimer AATAAGAATTATTATCATT -[3394380:3394398] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) napF (YPO3040) , napD (YPO3039) , napA (YPO3038) , narP (YPO3041) , YPO3042
      ... ... napF napD napA narP YPO3042
      90 18281395
      NC_003143.1 P33086 dimer AATGATCATAATTTCAAAT -[1360835:1360853] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) katA (YPO1207) , YPO1208
      ... ... katA YPO1208
      90 18281395
      NC_003143.1 P33086 dimer CATGATAATCATTCACATT -[2029760:2029778] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) ftn (YPO1783) , holE (YPO1782)
      ... ... ftn holE
      90 18281395

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      ACTGAGAATTATTTTCATG
      ATTGATAATCATTTTCATT
      AATGATAATCATTTTTATT
      AACGATAAGAATTCTTAAT
      AATGATAATCGTTTGCAAT
      AATGATAATCAAAATCGTT
      AGTGGTTATCATTATCAAT
      AATAATAATCATTTGCATT
      AATGCTTATCATAAGGATT
      AATAATAATTATTAACAAT
      AATAATAACCATTATCAAT
      AATAATAACCATTATCAAT
      AATGATAATTGATATCATT
      AATAATTATCAAAACCGTT
      AATAAAAATCATTAGCATT
      AATGATTATCATAATCACT
      ACTGATAGTCGTTATCATT
      AATGATAATTACTATCAAT
      AATAATGATAGTTATCAAT
      AATAAAACTCATTCTTATT
      AATGATAATCATAACCAAT
      AGTGGTTATCATTATCAAT
      ATTGATAATCACTATCATT
      CCTGATAACGATTTTCATT
      AGTGATAATTATTATCACT
      GATGATAATCATAGGCCAC
      CTTGATAATTATTCTCATT
      AATAAGAATTATTATCATT
      AATGATCATAATTTCAAAT
      CATGATAATCATTCACATT
      AACAATAATAATTCCCAAC
      AATGATAATCATAACCAAT

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      ACTGAGAATTATTTTCATG
      AATGAAAATGATTATCAAT
      AATAAAAATGATTATCATT
      ATTAAGAATTCTTATCGTT
      ATTGCAAACGATTATCATT
      AACGATTTTGATTATCATT
      AGTGGTTATCATTATCAAT
      AATGCAAATGATTATTATT
      AATCCTTATGATAAGCATT
      ATTGTTAATAATTATTATT
      AATAATAACCATTATCAAT
      AATAATAACCATTATCAAT
      AATGATATCAATTATCATT
      AACGGTTTTGATAATTATT
      AATGCTAATGATTTTTATT
      AGTGATTATGATAATCATT
      ACTGATAGTCGTTATCATT
      ATTGATAGTAATTATCATT
      ATTGATAACTATCATTATT
      AATAAGAATGAGTTTTATT
      ATTGGTTATGATTATCATT
      AGTGGTTATCATTATCAAT
      AATGATAGTGATTATCAAT
      CCTGATAACGATTTTCATT
      AGTGATAATTATTATCACT
      GTGGCCTATGATTATCATC
      AATGAGAATAATTATCAAG
      AATAAGAATTATTATCATT
      ATTTGAAATTATGATCATT
      AATGTGAATGATTATCATG
      GTTGGGAATTATTATTGTT
      ATTGGTTATGATTATCATT
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.