ArnR - UniProtKB: A4QDE6 regulon and binding site collection of Corynebacterium glutamicum R


Sites are listed as curated.

TAATTAAATA
TATTTAATTA
TATTTAATTA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TAATTAAATA
TAATTAAATA
TAATTAAATA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_009342.1 A4QDE6 not specified TAATTAAATA -[1396784:1396793] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) cgR_1269 , cgR_1268 , cgR_1267 , cgR_1266 , cgR_1265 , cgR_1270
    ... ... cgR_1269 cgR_1268 cgR_1267 cgR_1266 cgR_1265 cgR_1270
    713 18296524
    NC_009342.1 A4QDE6 not specified TATTTAATTA -[3016012:3016021] Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) cgR_2724 , cgR_2725 , cgR_2726
    ... ... cgR_2724 cgR_2725 cgR_2726
    713 18296524
    NC_009342.1 A4QDE6 not specified TATTTAATTA -[1388370:1388379] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) cgR_1264
    ... ... cgR_1264
    713 18296524

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TAATTAAATA
    TATTTAATTA
    TATTTAATTA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TAATTAAATA
    TAATTAAATA
    TAATTAAATA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.