Fur - UniProtKB: H7C6Q1 regulon and binding site collection of Bradyrhizobium diazoefficiens USDA 110


Sites are listed as curated.

GTTGCGAGAAACTTGCATCTGCATCTA
GCCAGATGCAGTTGCAAATGAGTTGCAATAAGCTT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TCTCTAGTTGCGAGAAACTTGCATCTGCATCTATC
AAGCTTATTGCAACTCATTTGCAACTGCATCTGGC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_004463.1 H7C6Q1 not specified GTTGCGAGAAACTTGCATCTGCATCTA -[823415:823441] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details In-vitro transcription (ECO:0001204) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) irr (bll0768) , fabA (blr0769) , fabB (blr0770) , fabI (blr0771) , blr0772
    ... ... irr fabA fabB fabI blr0772
    688 20573962
    NC_004463.1 H7C6Q1 not specified GCCAGATGCAGTTGCAAATGAGTTGCAATAAGCTT -[5595037:5595071] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) - Experimental technique details Site directed mutagenesis (ECO:0005667) mntH (bll5044) , blr5045
    ... ... mntH blr5045
    1076 19298371

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GTTGCGAGAAACTTGCATCTGCATCTA
    GCCAGATGCAGTTGCAAATGAGTTGCAATAAGCTT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TCTCTAGTTGCGAGAAACTTGCATCTGCATCTATC
    AAGCTTATTGCAACTCATTTGCAACTGCATCTGGC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.