FIS - UniProtKB: P57902 regulon and binding site collection of Pasteurella multocida subsp. multocida str. Pm70


Sites are listed as curated.

GACCAAAAATAAATC
GATTATATTTTAAAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GACCAAAAATAAATC
ATTTAAAATATAATC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002663.1 P57902 dimer GACCAAAAATAAATC +[914442:914456] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) phyA (PM0773) , hyaE (PM0774) , hexD (PM0778) , hexC (PM0779) , hexB (PM0780) , phyB (PM0772) , PM0771 , PM0770 , hrpA (PM0769) , PM0775 , PM0776 , PM0777 , hexA (PM0781) , PM0782 , PM0783 , PM0784 , PM0785 , PM0786
    ... ... phyA hyaE hexD hexC hexB phyB PM0771 PM0770 hrpA PM0775 PM0776 PM0777 hexA PM0782 PM0783 PM0784 PM0785 PM0786
    486 20140235
    NC_002663.1 P57902 dimer GATTATATTTTAAAT +[914566:914580] Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details DNA-array expression analysis (ECO:0005525) phyA (PM0773) , hyaE (PM0774) , hexD (PM0778) , hexC (PM0779) , hexB (PM0780) , phyB (PM0772) , PM0771 , PM0770 , hrpA (PM0769) , PM0775 , PM0776 , PM0777 , hexA (PM0781) , PM0782 , PM0783 , PM0784 , PM0785 , PM0786
    ... ... phyA hyaE hexD hexC hexB phyB PM0771 PM0770 hrpA PM0775 PM0776 PM0777 hexA PM0782 PM0783 PM0784 PM0785 PM0786
    486 20140235

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GACCAAAAATAAATC
    GATTATATTTTAAAT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GACCAAAAATAAATC
    ATTTAAAATATAATC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.