CcpA - UniProtKB: A0A0H2ZQ65 regulon and binding site collection of Streptococcus pneumoniae D39


Sites are listed as curated.

ATATAATCGCTATCAA
AAGAATGCGTTTTTAT
TTGTAAACGGTTTCTA
GAGAAAGGGTTTACAT
TATTAAACGCTTCCAA
TTTGTAAGCTATTCCAAAC
ATTGACAACACTGCCAAAA
ATCGAAAACGATAGCATCA
ATTGTTACCGATCACATTC
TGAAATCGAAACCAT
TTAAATCGTTTTCA
GGCAAACGCTTGCA
GATGAAAATGGTATCATCT
TATGAAAAAGCAATCACTC
TGTTATCTTTTTCAA
TGTCAAAGCTTTCAT
TTAAAAACGCTTGCAA
TGTAAACGATTTCA
TTAAACTGCTTTCA
AGAAAGCGTTTTCA
TGTAATCGATTTCA
TGCAACCGATTTAAA
TGAAATCGGTTACTT
ATGAAAGCGCAAACTT
ACAAAAACGCTTACAT
TGGAAAAGGCTTTCTT
ATGAAATCGGTATCTT
TTGACAACGGTTTCAT
AAGCAAACGCTTACTT
ACGAAAACGTTTGCAC
AAGTAATCGCTTTCTT
CAGAAAACGCTTCCTA
TATAAAGCGTTTTCAT
ATGAAATCGCATACAA
ATGAAACCGTTTCCTT
GTGTAATCGTTTTCTT
TATAAAACGTTTTCAA
ATGAAACTGTTTACAA
TAGAAAGCGTTTTCTT
AAGAAAGCGCTTTATT
AATGAAAGGGGTAACAAAT
TTTGTATTCGTTATCATTA
CATGAAAAAGAAACCAATT
AATGGAAAAGAATACACTC
AATGTTTGCGTTATCATTT
AGTGTAAACGATAACAGGA
TATGTAACCGGTAACACAT
ATTGAAAATGATGTCAACT
GGCAAACGCTTGCA
TGTTATCTTTTTCAA
TGTCAAAGCTTTCAT
TTAAAAACGCTTGCAA
GATGAAAATGGTATCATCT
TATGAAAAAGCAATCACTC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TTATATAATCGCTATCAATA
AGATAAAAACGCATTCTTTT
GATAGAAACCGTTTACAAAT
CTATGTAAACCCTTTCTCTC
TTTATTAAACGCTTCCAATA
GTTTGGAATAGCTTACAAAA
TTTTGGCAGTGTTGTCAATT
TATCGAAAACGATAGCATCA
CATTGTTACCGATCACATTC
GCCTGAAATCGAAACCATTC
AAGTGAAAACGATTTAATTT
TTAGGCAAACGCTTGCACAA
TGATGAAAATGGTATCATCT
ATATGAAAAAGCAATCACTC
TCTTGAAAAAGATAACAGCA
AGTTGTCAAAGCTTTCATCA
TTTTAAAAACGCTTGCAATT
GTATGTAAACGATTTCAAAG
TTCTTAAACTGCTTTCAAAG
AAATGAAAACGCTTTCTAGG
AGGTGTAATCGATTTCACAT
CTTTGCAACCGATTTAAACA
TAAAGTAACCGATTTCAACA
AAATGAAAGCGCAAACTTTC
TGACAAAAACGCTTACATCT
CTTGGAAAAGGCTTTCTTTT
AAAAGATACCGATTTCATTT
AATTGACAACGGTTTCATAT
AAAAGCAAACGCTTACTTAA
TTACGAAAACGTTTGCACTT
TAAAGTAATCGCTTTCTTTT
TACAGAAAACGCTTCCTAAA
AGATGAAAACGCTTTATATT
AAATGAAATCGCATACAAGA
CAATGAAACCGTTTCCTTTG
AGAAGAAAACGATTACACGT
CCTTGAAAACGTTTTATAGT
TTATGAAACTGTTTACAAAG
TCAAGAAAACGCTTTCTATT
ACAAGAAAGCGCTTTATTTT
AAATGAAAGGGGTAACAAAT
TAATGATAACGAATACAAAA
TCATGAAAAAGAAACCAATT
AAATGGAAAAGAATACACTC
AAATGATAACGCAAACATTC
TCCTGTTATCGTTTACACTA
ATATGTAACCGGTAACACAT
GATTGAAAATGATGTCAACT
TTAGGCAAACGCTTGCACAA
TCTTGAAAAAGATAACAGCA
AGTTGTCAAAGCTTTCATCA
TTTTAAAAACGCTTGCAATT
TGATGAAAATGGTATCATCT
ATATGAAAAAGCAATCACTC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_008533.1 A0A0H2ZQ65 dimer ATATAATCGCTATCAA -[64494:64509] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) strH (SPD_0063) , SPD_0064
    ... ... strH SPD_0064
    74 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AAGAATGCGTTTTTAT +[274482:274497] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) celA (SPD_0277) , SPD_0276
    ... ... celA SPD_0276
    74 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TTGTAAACGGTTTCTA -[285057:285072] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0286 , SPD_0287
    ... ... SPD_0286 SPD_0287
    74 22039538
    NC_008533.1 A0A0H2ZQ65 dimer GAGAAAGGGTTTACAT +[536844:536859] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fba (SPD_0526) , vncS (SPD_0525) , vncR (SPD_0524)
    ... ... fba vncS vncR
    74 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TATTAAACGCTTCCAA -[1355904:1355919] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) atpE (SPD_1341) , SPD_1342 , atpA (SPD_1337) , atpH (SPD_1338) , atpF (SPD_1339) , atpB (SPD_1340) , SPD_1343 , atpG (SPD_1336)
    ... ... atpE SPD_1342 atpA atpH atpF atpB SPD_1343 atpG
    74 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TTTGTAAGCTATTCCAAAC -[1420954:1420972] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) folA (SPD_1401) , SPD_1402 , SPD_1397 , engB (SPD_1398) , clpX (SPD_1399) , SPD_1400
    ... ... folA SPD_1402 SPD_1397 engB clpX SPD_1400
    75 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATTGACAACACTGCCAAAA +[1882105:1882123] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pstS (SPD_1910) , pstB (SPD_1913) , phoU (SPD_1914) , pstA (SPD_1912) , pstC (SPD_1911) , SPD_1908 , pnpS (SPD_1909)
    ... ... pstS pstB phoU pstA pstC SPD_1908 pnpS
    75 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATCGAAAACGATAGCATCA -[1052308:1052326] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1026 , lpdA (SPD_1025) , SPD_1027 , acoA (SPD_1028)
    ... ... SPD_1026 lpdA SPD_1027 acoA
    75 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATTGTTACCGATCACATTC +[98913:98931] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0098 , capD (SPD_0099) , SPD_0097
    ... ... SPD_0098 capD SPD_0097
    75 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGAAATCGAAACCAT -[729534:729548] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0714 , SPD_0715 , SPD_0713
    ... ... SPD_0714 SPD_0715 SPD_0713
    76 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TTAAATCGTTTTCA -[1274632:1274645] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) queA (SPD_1247) , nagB (SPD_1246)
    ... ... queA nagB
    77 22039538
    NC_008533.1 A0A0H2ZQ65 dimer GGCAAACGCTTGCA +[310643:310656] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) dexB (SPD_0311) , SPD_0310
    ... ... dexB SPD_0310
    77 22039538
    NC_008533.1 A0A0H2ZQ65 dimer GATGAAAATGGTATCATCT -[1080213:1080231] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) lacD (SPD_1050) , lacF-2 (SPD_1048) , lacA (SPD_1053) , lacB (SPD_1052) , lacC (SPD_1051) , lacE-2 (SPD_1047) , lacT (SPD_1049)
    ... ... lacD lacF-2 lacA lacB lacC lacE-2 lacT
    78 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TATGAAAAAGCAATCACTC -[97942:97960] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0097 , SPD_0098 , SPD_0095 , SPD_0094 , SPD_0096 , capD (SPD_0099)
    ... ... SPD_0097 SPD_0098 SPD_0095 SPD_0094 SPD_0096 capD
    78 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGTTATCTTTTTCAA -[1538042:1538056] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1515 , SPD_1516 , SPD_1513 , SPD_1514 , SPD_1517
    ... ... SPD_1515 SPD_1516 SPD_1513 SPD_1514 SPD_1517
    79 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGTCAAAGCTTTCAT +[1988557:1988571] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) glpO (SPD_2012) , glpK (SPD_2013) , glpF (SPD_2011)
    ... ... glpO glpK glpF
    79 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TTAAAAACGCTTGCAA -[1907163:1907178] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) malQ (SPD_1933) , malX (SPD_1934) , malP (SPD_1932)
    ... ... malQ malX malP
    80 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGTAAACGATTTCA +[92758:92771] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0092 , SPD_0091
    ... ... SPD_0092 SPD_0091
    81 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TTAAACTGCTTTCA -[1023622:1023635] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1011 , glgC (SPD_1006) , glgD (SPD_1007) , glgA (SPD_1008) , serB (SPD_1009) , SPD_1010 , glgB (SPD_1005)
    ... ... SPD_1011 glgC glgD glgA serB SPD_1010 glgB
    81 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AGAAAGCGTTTTCA +[1434414:1434427] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1415 , SPD_1414
    ... ... SPD_1415 SPD_1414
    81 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGTAATCGATTTCA -[1512664:1512677] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1495 , SPD_1496 , nanE-1 (SPD_1497)
    ... ... SPD_1495 SPD_1496 nanE-1
    81 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGCAACCGATTTAAA -[1156860:1156874] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1126 , licB (SPD_1124) , pck (SPD_1125) , ispD (SPD_1127) , licC (SPD_1123)
    ... ... SPD_1126 licB pck ispD licC
    82 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGAAATCGGTTACTT +[419565:419579] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pflB (SPD_0420) , bacA (SPD_0417) , SPD_0418 , dinP (SPD_0419)
    ... ... pflB bacA SPD_0418 dinP
    82 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATGAAAGCGCAAACTT +[65807:65822] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) bgaC (SPD_0065) , SPD_0064 , SPD_0069 , SPD_0068 , SPD_0067 , SPD_0066
    ... ... bgaC SPD_0064 SPD_0069 SPD_0068 SPD_0067 SPD_0066
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ACAAAAACGCTTACAT -[94829:94844] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0093 , SPD_0094 , SPD_0096 , SPD_0095
    ... ... SPD_0093 SPD_0094 SPD_0096 SPD_0095
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGGAAAAGGCTTTCTT -[264541:264556] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0265 , SPD_0266
    ... ... SPD_0265 SPD_0266
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATGAAATCGGTATCTT +[404731:404746] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) ilvB (SPD_0404) , SPD_0403 , SPD_0402 , ilvH (SPD_0405)
    ... ... ilvB SPD_0403 SPD_0402 ilvH
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TTGACAACGGTTTCAT +[576942:576957] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0559 , SPD_0561 , SPD_0560 , prtA (SPD_0558)
    ... ... SPD_0559 SPD_0561 SPD_0560 prtA
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AAGCAAACGCTTACTT +[642461:642476] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) lctO (SPD_0621) , lysS (SPD_0620)
    ... ... lctO lysS
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ACGAAAACGTTTGCAC -[678852:678867] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) exp5 (SPD_0661) , ftsX (SPD_0660) , prfB (SPD_0658) , ftsE (SPD_0659)
    ... ... exp5 ftsX prfB ftsE
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AAGTAATCGCTTTCTT -[1025728:1025743] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1010 , SPD_1011 , serB (SPD_1009) , eno (SPD_1012)
    ... ... SPD_1010 SPD_1011 serB eno
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer CAGAAAACGCTTCCTA -[1102059:1102074] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1075 , srtA (SPD_1076) , gyrA (SPD_1077)
    ... ... SPD_1075 srtA gyrA
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TATAAAGCGTTTTCAT -[1429281:1429296] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1409 , SPD_1410
    ... ... SPD_1409 SPD_1410
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATGAAATCGCATACAA -[1512146:1512161] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1496 , SPD_1495 , nanE-1 (SPD_1497)
    ... ... SPD_1496 SPD_1495 nanE-1
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATGAAACCGTTTCCTT +[1626427:1626442] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1610 , SPD_1609 , SPD_1611 , galE-2 (SPD_1612) , galT-1 (SPD_1613) , SPD_1614
    ... ... SPD_1610 SPD_1609 SPD_1611 galE-2 galT-1 SPD_1614
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer GTGTAATCGTTTTCTT +[1649338:1649353] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) galK (SPD_1634) , galT-2 (SPD_1633) , galR (SPD_1635) , SPD_1636 , SPD_1637
    ... ... galK galT-2 galR SPD_1636 SPD_1637
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TATAAAACGTTTTCAA -[1770931:1770946] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pflA (SPD_1774) , lysA (SPD_1775)
    ... ... pflA lysA
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATGAAACTGTTTACAA -[1821958:1821973] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1834 , SPD_1835 , SPD_1836 , SPD_1837 , yajC (SPD_1838)
    ... ... SPD_1834 SPD_1835 SPD_1836 SPD_1837 yajC
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TAGAAAGCGTTTTCTT +[1952528:1952543] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1978 , arcC (SPD_1977) , SPD_1979
    ... ... SPD_1978 arcC SPD_1979
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AAGAAAGCGCTTTATT -[1991283:1991298] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) glpK (SPD_2013) , glpO (SPD_2012) , SPD_2014
    ... ... glpK glpO SPD_2014
    83 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AATGAAAGGGGTAACAAAT -[1992808:1992826] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_2014 , glpK (SPD_2013) , glpO (SPD_2012) , hslO (SPD_2015) , SPD_2016
    ... ... SPD_2014 glpK glpO hslO SPD_2016
    84 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TTTGTATTCGTTATCATTA +[88872:88890] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0089 , SPD_0088 , SPD_0090
    ... ... SPD_0089 SPD_0088 SPD_0090
    84 22039538
    NC_008533.1 A0A0H2ZQ65 dimer CATGAAAAAGAAACCAATT +[163873:163891] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0159 , SPD_0158 , SPD_0157 , SPD_0156 , SPD_0160
    ... ... SPD_0159 SPD_0158 SPD_0157 SPD_0156 SPD_0160
    84 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AATGGAAAAGAATACACTC +[469824:469842] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) dnaK (SPD_0460) , grpE (SPD_0459) , hrcA (SPD_0458) , dnaJ (SPD_0461)
    ... ... dnaK grpE hrcA dnaJ
    84 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AATGTTTGCGTTATCATTT +[687523:687541] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) sodA (SPD_0667) , holA (SPD_0666) , pyrDa (SPD_0665)
    ... ... sodA holA pyrDa
    84 22039538
    NC_008533.1 A0A0H2ZQ65 dimer AGTGTAAACGATAACAGGA +[781888:781906] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) lacR1 (SPD_0771) , SPD_0770 , SPD_0772 , SPD_0773
    ... ... lacR1 SPD_0770 SPD_0772 SPD_0773
    84 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TATGTAACCGGTAACACAT -[1376643:1376661] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1360 , murE (SPD_1359) , SPD_1361 , SPD_1362
    ... ... SPD_1360 murE SPD_1361 SPD_1362
    84 22039538
    NC_008533.1 A0A0H2ZQ65 dimer ATTGAAAATGATGTCAACT -[1505421:1505439] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1488 , SPD_1487 , SPD_1489
    ... ... SPD_1488 SPD_1487 SPD_1489
    84 22039538
    NC_008533.1 A0A0H2ZQ65 dimer GGCAAACGCTTGCA +[310643:310656] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) dexB (SPD_0311) , SPD_0310
    ... ... dexB SPD_0310
    85 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGTTATCTTTTTCAA -[1538042:1538056] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_1515 , SPD_1514 , SPD_1513 , SPD_1516 , SPD_1517
    ... ... SPD_1515 SPD_1514 SPD_1513 SPD_1516 SPD_1517
    86 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TGTCAAAGCTTTCAT +[1988557:1988571] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) glpO (SPD_2012) , glpF (SPD_2011) , glpK (SPD_2013)
    ... ... glpO glpF glpK
    86 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TTAAAAACGCTTGCAA -[1907163:1907178] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) malQ (SPD_1933) , malP (SPD_1932) , malX (SPD_1934)
    ... ... malQ malP malX
    87 22039538
    NC_008533.1 A0A0H2ZQ65 dimer GATGAAAATGGTATCATCT -[1080213:1080231] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) lacD (SPD_1050) , lacT (SPD_1049) , lacF-2 (SPD_1048) , lacE-2 (SPD_1047) , lacC (SPD_1051) , lacB (SPD_1052) , lacA (SPD_1053)
    ... ... lacD lacT lacF-2 lacE-2 lacC lacB lacA
    88 22039538
    NC_008533.1 A0A0H2ZQ65 dimer TATGAAAAAGCAATCACTC -[97942:97960] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) SPD_0097 , SPD_0096 , SPD_0095 , SPD_0094 , SPD_0098 , capD (SPD_0099)
    ... ... SPD_0097 SPD_0096 SPD_0095 SPD_0094 SPD_0098 capD
    88 22039538

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    ATATAATCGCTATCAA
    AAGAATGCGTTTTTAT
    TTGTAAACGGTTTCTA
    GAGAAAGGGTTTACAT
    TATTAAACGCTTCCAA
    TTTGTAAGCTATTCCAAAC
    ATTGACAACACTGCCAAAA
    ATCGAAAACGATAGCATCA
    ATTGTTACCGATCACATTC
    TGAAATCGAAACCAT
    TTAAATCGTTTTCA
    GGCAAACGCTTGCA
    GATGAAAATGGTATCATCT
    TATGAAAAAGCAATCACTC
    TGTTATCTTTTTCAA
    TGTCAAAGCTTTCAT
    TTAAAAACGCTTGCAA
    TGTAAACGATTTCA
    TTAAACTGCTTTCA
    AGAAAGCGTTTTCA
    TGTAATCGATTTCA
    TGCAACCGATTTAAA
    TGAAATCGGTTACTT
    ATGAAAGCGCAAACTT
    ACAAAAACGCTTACAT
    TGGAAAAGGCTTTCTT
    ATGAAATCGGTATCTT
    TTGACAACGGTTTCAT
    AAGCAAACGCTTACTT
    ACGAAAACGTTTGCAC
    AAGTAATCGCTTTCTT
    CAGAAAACGCTTCCTA
    TATAAAGCGTTTTCAT
    ATGAAATCGCATACAA
    ATGAAACCGTTTCCTT
    GTGTAATCGTTTTCTT
    TATAAAACGTTTTCAA
    ATGAAACTGTTTACAA
    TAGAAAGCGTTTTCTT
    AAGAAAGCGCTTTATT
    AATGAAAGGGGTAACAAAT
    TTTGTATTCGTTATCATTA
    CATGAAAAAGAAACCAATT
    AATGGAAAAGAATACACTC
    AATGTTTGCGTTATCATTT
    AGTGTAAACGATAACAGGA
    TATGTAACCGGTAACACAT
    ATTGAAAATGATGTCAACT
    GGCAAACGCTTGCA
    TGTTATCTTTTTCAA
    TGTCAAAGCTTTCAT
    TTAAAAACGCTTGCAA
    GATGAAAATGGTATCATCT
    TATGAAAAAGCAATCACTC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TTATATAATCGCTATCAATA
    AGATAAAAACGCATTCTTTT
    GATAGAAACCGTTTACAAAT
    CTATGTAAACCCTTTCTCTC
    TTTATTAAACGCTTCCAATA
    GTTTGGAATAGCTTACAAAA
    TTTTGGCAGTGTTGTCAATT
    TATCGAAAACGATAGCATCA
    CATTGTTACCGATCACATTC
    GCCTGAAATCGAAACCATTC
    AAGTGAAAACGATTTAATTT
    TTAGGCAAACGCTTGCACAA
    TGATGAAAATGGTATCATCT
    ATATGAAAAAGCAATCACTC
    TCTTGAAAAAGATAACAGCA
    AGTTGTCAAAGCTTTCATCA
    TTTTAAAAACGCTTGCAATT
    GTATGTAAACGATTTCAAAG
    TTCTTAAACTGCTTTCAAAG
    AAATGAAAACGCTTTCTAGG
    AGGTGTAATCGATTTCACAT
    CTTTGCAACCGATTTAAACA
    TAAAGTAACCGATTTCAACA
    AAATGAAAGCGCAAACTTTC
    TGACAAAAACGCTTACATCT
    CTTGGAAAAGGCTTTCTTTT
    AAAAGATACCGATTTCATTT
    AATTGACAACGGTTTCATAT
    AAAAGCAAACGCTTACTTAA
    TTACGAAAACGTTTGCACTT
    TAAAGTAATCGCTTTCTTTT
    TACAGAAAACGCTTCCTAAA
    AGATGAAAACGCTTTATATT
    AAATGAAATCGCATACAAGA
    CAATGAAACCGTTTCCTTTG
    AGAAGAAAACGATTACACGT
    CCTTGAAAACGTTTTATAGT
    TTATGAAACTGTTTACAAAG
    TCAAGAAAACGCTTTCTATT
    ACAAGAAAGCGCTTTATTTT
    AAATGAAAGGGGTAACAAAT
    TAATGATAACGAATACAAAA
    TCATGAAAAAGAAACCAATT
    AAATGGAAAAGAATACACTC
    AAATGATAACGCAAACATTC
    TCCTGTTATCGTTTACACTA
    ATATGTAACCGGTAACACAT
    GATTGAAAATGATGTCAACT
    TTAGGCAAACGCTTGCACAA
    TCTTGAAAAAGATAACAGCA
    AGTTGTCAAAGCTTTCATCA
    TTTTAAAAACGCTTGCAATT
    TGATGAAAATGGTATCATCT
    ATATGAAAAAGCAATCACTC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.