Transcription Factor Binding Site Information

Agrobacterium fabrum - NC_003065.3
TraR [UniProtKB:P54294, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATGTGCAGATCTGCACGT + [143803, 143820] 10220379 Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details In-vitro transcription (ECO:0001204) - 1033

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... traC traD traG Atu6123 traA traF traB traH
Gene Locus tag Description
traC Atu6126 conjugal transfer protein TraC
traD Atu6125 conjugal transfer protein TraD
traG Atu6124 conjugal transfer coupling protein TraG
Atu6123 Atu6123 hypothetical protein
traA Atu6127 Dtr system oriT relaxase
traF Atu6128 conjugal transfer pilin processing protease TraF
traB Atu6129 conjugal transfer protein TraB
traH Atu6130 conjugal transfer protein TraH