Transcription Factor Binding Site Information

Agrobacterium fabrum - NC_003065.3
TraR [UniProtKB:P54294, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGTGCAGATCTGCACTT + [52019, 52036] 12753196 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - 1032

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... repA repB traI trbB trbC trbD trbE trbJ trbK trbL trbF trbG trbH trbI Atu6030
Gene Locus tag Description
repA Atu6043 plasmid-partitioning protein RepA
repB Atu6044 plasmid partitioning protein RepB
traI Atu6042 putative autoinducer synthesis protein
trbB Atu6041 conjugal transfer protein TrbB
trbC Atu6040 conjugal transfer protein TrbC
trbD Atu6039 conjugal transfer protein TrbD
trbE Atu6038 conjugal transfer protein TrbE
trbJ Atu6037 conjugal transfer protein TrbJ
trbK Atu6036 entry-exclusion protein
trbL Atu6035 conjugal transfer protein TrbL
trbF Atu6034 conjugal transfer protein TrbF
trbG Atu6033 conjugal transfer protein TrbG
trbH Atu6032 conjugal transfer protein TrbH
trbI Atu6031 conjugal transfer protein TrbI
Atu6030 Atu6030 hypothetical protein