Transcription Factor Binding Site Information

Sinorhizobium meliloti - NC_017325.1
Rem [UniProtKB:F7X8H2, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GCGTTAACTTTTCAACATCATGTTAGTGGTAAGGTTAACGATCACCC + [326774, 326820] 16980496 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Growth curve analysis (ECO:0005638) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) - 992

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... rem flgE flgK flgL flaF flbT flgD fliQ flhA fliR SM11_chr0327 SM11_chr0328 SM11_chr0329 SM11_chr0330
Gene Locus tag Description
rem SM11_chr0317 Regulator of exponential growth motility
flgE SM11_chr0318 flagellar hook-associated protein
flgK SM11_chr0319 Flagellar hook-associated protein
flgL SM11_chr0320 flagellar hook-associated protein
flaF SM11_chr0321 flagellar biosynthesis regulatory protein
flbT SM11_chr0322 flagellar biosynthesis repressor
flgD SM11_chr0323 flagellar basal body rod modification protein
fliQ SM11_chr0324 flagellar biosynthesis protein
flhA SM11_chr0325 flagellar biosynthesis protein
fliR SM11_chr0326 flagellar biosynthesis protein
SM11_chr0327 SM11_chr0327 hypothetical protein
SM11_chr0328 SM11_chr0328 hypothetical protein
SM11_chr0329 SM11_chr0329 hypothetical protein
SM11_chr0330 SM11_chr0330 hypothetical protein