Transcription Factor Binding Site Information

Aliivibrio fischeri - NC_006841.2
ArcA [UniProtKB:Q5E2Y1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CGTGGTGTTAACATTGC - [1049434, 1049450] 17590235 Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details GFP Promoter Fusion (ECO:0005636) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 903

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... luxI luxC luxD luxA luxB luxE fre luxR
Gene Locus tag Description
luxI VF_A0924 3-oxo-C6-HSL autoinducer synthesis protein LuxI
luxC VF_A0923 acyl-CoA reductase
luxD VF_A0922 acyl transferase
luxA VF_A0921 luciferase alpha chain LuxA
luxB VF_A0920 luciferase beta chain LuxB
luxE VF_A0919 long-chain-fatty-acid ligase LuxE
fre VF_A0918 FMN reductase
luxR VF_A0925 LuxR family transcriptional regulator