Transcription Factor Binding Site Information

Pseudomonas putida - NC_015733.1
CatR [UniProtKB:F8G324, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TCCATCAGACCTCCAGGGTATGGTGGGAGATTCATTCGATATTGGACGGC - [3574989, 3575038] 7809047 Experimental technique details Ad-hoc qualitative phenotype observation (ECO:0005674) - Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - 825

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PPS_3181 PPS_3180 PPS_3182 PPS_3179 PPS_3183
Gene Locus tag Description
PPS_3181 PPS_3181 muconate and chloromuconate cycloisomerase
PPS_3180 PPS_3180 muconolactone delta-isomerase
PPS_3182 PPS_3182 LysR family transcriptional regulator
PPS_3179 PPS_3179 catechol 1,2-dioxygenase
PPS_3183 PPS_3183 D-serine dehydratase