Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00012ed0
Genome
Pseudomonas sp. ADP - NC_004956.1
TF
AtzR [UniProtKB:Q936X4, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GGTCGGAAAAAGGCGGCAGTCAAGTGCG + [100894, 100921] 17854404 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) - 652

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... atzD orf99 orf98 orf97 orf96 orf95 orf94
Gene Locus tag Description
atzD pADP-1_p100 cyanuric acid amidohydrolase
orf99 pADP-1_p099 LysR family of transcriptional regulators
orf98 pADP-1_p098 similar to hypothetical protein from Pseudomonas aeruginosa
orf97 pADP-1_p097 similar to hypothetical protein from Pseudomonas aeruginosa
orf96 pADP-1_p096 similar to ATP-binding domain of ABC transporter from Pseudomonas aeruginosa
orf95 pADP-1_p095 similar to permease of ABC transporter from Pseudomonas aeruginosa
orf94 pADP-1_p094 similar to permease of ABC transporter from Pseudomonas aeruginosa