Transcription Factor Binding Site Information

Pseudomonas putida - NC_002947.3
ColR [UniProtKB:Q88PE9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CTAAGATTTTTTTGAC + [2910679, 2910694] 19445690 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 651

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PP_2561 PP_2560 hasE PP_2558
Gene Locus tag Description
PP_2561 PP_2561 heme peroxidase
PP_2560 PP_2560 type I secretion system ATPase
hasE PP_2559 HlyD family type I secretion membrane fusion protein
PP_2558 PP_2558 TolC family type I secretion outer membrane protein