Transcription Factor Binding Site Information

Pseudomonas putida - NC_002947.3
ColR [UniProtKB:Q88PE9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTGACGGTTTTTTCAC - [1041402, 1041417] 19445690 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 651

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PP_0900 colR PP_0902 PP_0903 PP_0904 PP_0905
Gene Locus tag Description
PP_0900 PP_0900 PAP2 family protein
colR PP_0901 winged helix family two component transcriptional regulator
PP_0902 PP_0902 integral membrane sensor signal transduction histidine kinase
PP_0903 PP_0903 type 11 methyltransferase
PP_0904 PP_0904 lipopolysaccharide kinase
PP_0905 PP_0905 hypothetical protein