Transcription Factor Binding Site Information

Pseudomonas putida - NC_002947.3
ColR [UniProtKB:Q88PE9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TTCACTATTTTTTCAC - [39038, 39053] 19445690 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details PSSM site search (ECO:0005659) - 651

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PP_0035 PP_0034 PP_0033 PP_0036
Gene Locus tag Description
PP_0035 PP_0035 GtrA family protein
PP_0034 PP_0034 ribonuclease III
PP_0033 PP_0033 sugar transferase
PP_0036 PP_0036 LysR family transcriptional regulator