Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00009830
Genome
Peptoclostridium difficile - NC_009089.1
TF
CodY [UniProtKB:Q18BE1, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
AATCTTTATACAATT + [1059854, 1059868] 20709897 Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - 476

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... glgC CD630_08810 CD630_08800 glgD glgA glgP CD630_08860
Gene Locus tag Description
glgC CD630_08820 glucose-1-phosphate adenylyltransferase
CD630_08810 CD630_08810 protein modulating protease activity
CD630_08800 CD630_08800 protease
glgD CD630_08830 glycogen biosynthesis protein
glgA CD630_08840 glycogen synthase (Starch [bacterial glycogen] synthase)
glgP CD630_08850 glycogen phosphorylase
CD630_08860 CD630_08860 alpha-amylase