Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00009560
Genome
Pseudomonas aeruginosa - NC_002516.2
TF
AlgR [UniProtKB:P26275, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
CCGTTTGGC + [5098168, 5098176] 15317771 Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 459

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... fimT fimU pilV pilW pilX pilY1 pilY2 PA4548 pilR pilS pilE lytB PA4558 lspA ileS ribF PA4562
Gene Locus tag Description
fimT PA4549 type 4 fimbrial biogenesis protein FimT
fimU PA4550 type 4 fimbrial biogenesis protein FimU
pilV PA4551 type 4 fimbrial biogenesis protein PilV
pilW PA4552 type 4 fimbrial biogenesis protein PilW
pilX PA4553 type 4 fimbrial biogenesis protein PilX
pilY1 PA4554 type 4 fimbrial biogenesis protein PilY1
pilY2 PA4555 type 4 fimbrial biogenesis protein PilY2
PA4548 PA4548 D-amino acid oxidase
pilR PA4547 two-component response regulator PilR
pilS PA4546 two-component sensor PilS
pilE PA4556 type 4 fimbrial biogenesis protein PilE
lytB PA4557 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
PA4558 PA4558 peptidyl-prolyl cis-trans isomerase, FkbP-type
lspA PA4559 lipoprotein signal peptidase
ileS PA4560 isoleucyl-tRNA synthetase
ribF PA4561 bifunctional riboflavin kinase/FMN adenylyltransferase
PA4562 PA4562 hypothetical protein