LexA - UniProtKB: Q92PW3 regulon and binding site collection of Sinorhizobium meliloti 1021


Sites are listed as curated.

TGTTCTTGATTTGTTTCG
TGTTCCATATGTGTTCCG
TGTTTTTGTTTTGTTCAC
TGTTCCGGATATGATCGA
CGTTCAACATTTGTTCCG
TGTTCATGTTATGTTCTT
AATTCGCCTTTTGTTCGC
TGTTCTCGTTTTGATCTG
TGTTCTTGATTTGTTCTA
GAGAACAAATACAGAACAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTGTTCTTGATTTGTTTCG
CTGTTCCATATGTGTTCCG
ATGTTTTTGTTTTGTTCAC
TTGTTCCGGATATGATCGA
GCGTTCAACATTTGTTCCG
ATGTTCATGTTATGTTCTT
AAATTCGCCTTTTGTTCGC
ATGTTCTCGTTTTGATCTG
TTGTTCTTGATTTGTTCTA
ATGTTCTGTATTTGTTCTC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
TGTTCTTGATTTGTTTCG Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) lexA (SMc01183) , tRNA-ALA_CGC (SMc01244)
... ... lexA tRNA-ALA_CGC
114 15604457
TGTTCCATATGTGTTCCG Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) lexA (SMc01183) , tRNA-ALA_CGC (SMc01244)
... ... lexA tRNA-ALA_CGC
114 15604457
TGTTTTTGTTTTGTTCAC Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) ruvC (SMc03967) , SMc03968
... ... ruvC SMc03968
114 15604457
TGTTCCGGATATGATCGA Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) dinP (SMc01373) , SMc01374 , SMc01372
... ... dinP SMc01374 SMc01372
114 15604457
CGTTCAACATTTGTTCCG Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) dinP (SMc01373) , SMc01372
... ... dinP SMc01372
114 15604457
TGTTCATGTTATGTTCTT Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) dnaE2 (SMc03788) , SMc03790 , SMc03789 , SMc03791
... ... dnaE2 SMc03790 SMc03789 SMc03791
114 15604457
AATTCGCCTTTTGTTCGC Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) parE (SMc01018) , SMc01017 , SMc01019 , SMc01020 , SMc01021 , SMc01022
... ... parE SMc01017 SMc01019 SMc01020 SMc01021 SMc01022
114 15604457
TGTTCTCGTTTTGATCTG Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SMc01102 , def (SMc01101)
... ... SMc01102 def
114 15604457
TGTTCTTGATTTGTTCTA Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) SMc00866 , SMc00865
... ... SMc00866 SMc00865
114 15604457
GAGAACAAATACAGAACAT Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) dnaE3 (SMa0892) , SMa0890 , SMa0888 , SMa0886 , SMa5005 , SMa0887
... ... dnaE3 SMa0890 SMa0888 SMa0886 SMa5005 SMa0887
132 15458417

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

TGTTCTTGATTTGTTTCG
TGTTCCATATGTGTTCCG
TGTTTTTGTTTTGTTCAC
TGTTCCGGATATGATCGA
CGTTCAACATTTGTTCCG
TGTTCATGTTATGTTCTT
AATTCGCCTTTTGTTCGC
TGTTCTCGTTTTGATCTG
TGTTCTTGATTTGTTCTA
GAGAACAAATACAGAACAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTGTTCTTGATTTGTTTCG
CTGTTCCATATGTGTTCCG
ATGTTTTTGTTTTGTTCAC
TTGTTCCGGATATGATCGA
GCGTTCAACATTTGTTCCG
ATGTTCATGTTATGTTCTT
AAATTCGCCTTTTGTTCGC
ATGTTCTCGTTTTGATCTG
TTGTTCTTGATTTGTTCTA
ATGTTCTGTATTTGTTCTC
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.