Fur - UniProtKB: Q03456 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

TCTTCTGATAATTATTATC
CTGAATGATAATAATTATC
ACGAACGTGAATCATTCTC
GGAAATGAGAATCATTATT
GATAATGAGAATAGTTATT
GAAAACAATAATCAATCTC
GATAATGAGATTGATTATT
CAAAACGCATATCTGAATC
GATAATTATTTGCATTAGC
AAAAACGAGAATTATTCGC
ACGATTGAAAATCATTATC
ACGATTGCTAATCAATCTT
ATAATTGAGAATCGTTATT
CTGAATGAAACCCAATCTT
CTTGATGAGAATTATTATA
GAAAACAATAATCAATCTC
GAAGATGGTAATTAATTGC
GACATTGAGATTCAATAAC
GCAAACGATATTCATTATC
GCCAATGATATTGATTTGC
GGAAATGAGAATCATTATT
GTAATTGACAATCATTATC
GTTATTGAGAATCATTGGC
TAAATTTATAATAATTCTC
TCCAATGCAAATCAATATC
TTTATCGCAACTGATTATC
TTTTATGATAATGATTTTC
ACGAACGTGAATCATTCTC
CTGAATGATAATAATTATC
GATAATGAGAATAGTTATT
TCTTCTGATAATTATTATC
TGTAATAATAACTATTCTC
GATATTAATACCCATTTCA
GTAATTGACAATCATTATC
GATAATAAGAATTATTCTC
GACATTGAGATTCAATAAC
GCGAATGATAATACATATC
TGTAATAAGAATCAGTCTC
AAAAACGAGAATTATTCGC
GCAAATGCTAATCATTCGC
ACGATTGCTAATCAATCTT
GCTGATTACCATCATGATG
GCTAATGCAAATAATTATC
TCCAATGCAAATCAATATC
GATAATTATTTGCATTAGC
AAAAATGCAAATCTTTCGC
GATAATGAGATTGATTATT
GAAGATGGTAATTAATTGC
CTTGATGAGAATTATTATA
CTGAATGATAATAATTATC
CATAATGATAAGCATTATC
ACGAATGATAAGAAATCTC
AATAATGAGAATGATTGTC
GACAATGCGATTCATTATC
GATAATGGCGATCTTCATC
GCAAATGAAAACTATTATC
GGAAATGAGATTTATTATC
TAAAATGATAACTATTATC
TAAATTTATAATAATTCTC
TTTTATGATAATGATTTTC
CCAAATGGGAATGACTCTC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TCTTCTGATAATTATTATC
CTGAATGATAATAATTATC
GAGAATGATTCACGTTCGT
AATAATGATTCTCATTTCC
GATAATGAGAATAGTTATT
GAGATTGATTATTGTTTTC
AATAATCAATCTCATTATC
GATTCAGATATGCGTTTTG
GCTAATGCAAATAATTATC
GCGAATAATTCTCGTTTTT
ACGATTGAAAATCATTATC
ACGATTGCTAATCAATCTT
ATAATTGAGAATCGTTATT
CTGAATGAAACCCAATCTT
CTTGATGAGAATTATTATA
GAGATTGATTATTGTTTTC
GCAATTAATTACCATCTTC
GTTATTGAATCTCAATGTC
GATAATGAATATCGTTTGC
GCAAATCAATATCATTGGC
AATAATGATTCTCATTTCC
GTAATTGACAATCATTATC
GTTATTGAGAATCATTGGC
GAGAATTATTATAAATTTA
TCCAATGCAAATCAATATC
TTTATCGCAACTGATTATC
TTTTATGATAATGATTTTC
GAGAATGATTCACGTTCGT
CTGAATGATAATAATTATC
GATAATGAGAATAGTTATT
TCTTCTGATAATTATTATC
GAGAATAGTTATTATTACA
GATATTAATACCCATTTCA
GTAATTGACAATCATTATC
GAGAATAATTCTTATTATC
GTTATTGAATCTCAATGTC
GCGAATGATAATACATATC
GAGACTGATTCTTATTACA
GCGAATAATTCTCGTTTTT
GCGAATGATTAGCATTTGC
ACGATTGCTAATCAATCTT
CATCATGATGGTAATCAGC
GCTAATGCAAATAATTATC
TCCAATGCAAATCAATATC
GCTAATGCAAATAATTATC
GCGAAAGATTTGCATTTTT
AATAATCAATCTCATTATC
GCAATTAATTACCATCTTC
CTTGATGAGAATTATTATA
CTGAATGATAATAATTATC
CATAATGATAAGCATTATC
ACGAATGATAAGAAATCTC
GACAATCATTCTCATTATT
GATAATGAATCGCATTGTC
GATAATGGCGATCTTCATC
GCAAATGAAAACTATTATC
GATAATAAATCTCATTTCC
TAAAATGATAACTATTATC
GAGAATTATTATAAATTTA
TTTTATGATAATGATTTTC
CCAAATGGGAATGACTCTC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
TCTTCTGATAATTATTATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) PA5532 , tonB1 (PA5531)
... ... PA5532 tonB1
296 8633080
CTGAATGATAATAATTATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) PA5532 , tonB1 (PA5531)
... ... PA5532 tonB1
296 8633080
ACGAACGTGAATCATTCTC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) pfeS (PA2687) , PA2684 , PA2685 , pfeR (PA2686)
... ... pfeS PA2684 PA2685 pfeR
296 8633080
GGAAATGAGAATCATTATT Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) prrF1 (PA4704.1) , cbpA (PA4704) , prrF2 (PA4704.2)
... ... prrF1 cbpA prrF2
94 15210934
GATAATGAGAATAGTTATT Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) prrF2 (PA4704.2) , prrF1 (PA4704.1) , PA4705 , PA4706 , PA4707
... ... prrF2 prrF1 PA4705 PA4706 PA4707
94 15210934
GAAAACAATAATCAATCTC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) PA4471 , fumC1 (PA4470) , PA4469 , sodM (PA4468) , PA4467 , pmbA (PA4472) , PA4473 , PA4474 , PA4475 , PA4476 , cafA (PA4477) , PA4478
... ... 5000000 PA4471 fumC1 PA4469 sodM PA4467 pmbA PA4473 PA4474 PA4475 PA4476 cafA PA4478
188 9045799
GATAATGAGATTGATTATT Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) PA4471 , fumC1 (PA4470) , PA4469 , sodM (PA4468) , PA4467 , pmbA (PA4472) , PA4473 , PA4474 , PA4475 , PA4476 , cafA (PA4477) , PA4478
... ... 5000000 PA4471 fumC1 PA4469 sodM PA4467 pmbA PA4473 PA4474 PA4475 PA4476 cafA PA4478
188 9045799
CAAAACGCATATCTGAATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details RNAse protection (ECO:0000288) phuR (PA4710) , phuT (PA4708) , PA4709
... ... phuR phuT PA4709
306 10658665
GATAATTATTTGCATTAGC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details RNAse protection (ECO:0000288) phuR (PA4710) , phuT (PA4708) , PA4709
... ... phuR phuT PA4709
306 10658665
AAAAACGAGAATTATTCGC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA0472 , PA0471 , fiuA (PA0470) , PA0473 , PA0474 , PA0475 , PA0476
... ... PA0472 PA0471 fiuA PA0473 PA0474 PA0475 PA0476
411 8633080
ACGATTGAAAATCATTATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA3410 , PA3409 , PA3411 , PA3412
... ... PA3410 PA3409 PA3411 PA3412
411 8633080
ACGATTGCTAATCAATCTT Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA0929 , gacS (PA0928) , ldhA (PA0927) , PA0926 , PA0925 , PA0924 , dinB (PA0923) , PA0922.1 , PA0930
... ... PA0929 gacS ldhA PA0926 PA0925 PA0924 dinB PA0922.1 PA0930
411 8633080
ATAATTGAGAATCGTTATT Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) hemO (PA0672) , PA0671 , PA0670 , PA0669 , PA0673
... ... hemO PA0671 PA0670 PA0669 PA0673
411 8633080
CTGAATGAAACCCAATCTT Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4634 , PA4633 , PA4635
... ... PA4634 PA4633 PA4635
411 8633080
CTTGATGAGAATTATTATA Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) fpvI (PA2387) , pvdA (PA2386) , pvdQ (PA2385) , fpvR (PA2388) , pvdR (PA2389) , pvdT (PA2390) , opmQ (PA2391) , pvdP (PA2392)
... ... fpvI pvdA pvdQ fpvR pvdR pvdT opmQ pvdP
411 8633080
GAAAACAATAATCAATCTC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4471 , fumC1 (PA4470) , PA4469 , sodM (PA4468) , PA4467 , PA4466 , PA4465 , ptsN (PA4464) , PA4463 , rpoN (PA4462) , pmbA (PA4472) , PA4473 , PA4474 , PA4475 , PA4476 , cafA (PA4477) , PA4478 , mreD (PA4479) , mreC (PA4480) , mreB (PA4481)
... ... 5000000 PA4471 fumC1 PA4469 sodM PA4467 PA4466 PA4465 ptsN PA4463 rpoN pmbA PA4473 PA4474 PA4475 PA4476 cafA PA4478 mreD mreC mreB
411 8633080
GAAGATGGTAATTAATTGC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) pmpR (PA0964) , ruvB (PA0967) , ruvA (PA0966) , ruvC (PA0965) , aspS (PA0963) , PA0968 , tolQ (PA0969) , tolR (PA0970) , tolA (PA0971) , tolB (PA0972) , oprL (PA0973) , PA0974 , PA0975 , PA0976 , PA0976.1 , PA0977
... ... pmpR ruvB ruvA ruvC aspS PA0968 tolQ tolR tolA tolB oprL PA0974 PA0975 PA0976 PA0976.1 PA0977
411 8633080
GACATTGAGATTCAATAAC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) hemO (PA0672) , PA0671 , PA0670 , PA0669 , PA0673
... ... hemO PA0671 PA0670 PA0669 PA0673
411 8633080
GCAAACGATATTCATTATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) nuoA (PA2637) , PA2636 , PA2635 , nuoB (PA2638) , nuoD (PA2639) , nuoE (PA2640) , nuoF (PA2641) , nuoG (PA2642) , nuoH (PA2643) , nuoI (PA2644) , nuoJ (PA2645) , nuoK (PA2646) , nuoL (PA2647) , nuoM (PA2648) , nuoN (PA2649) , PA2650
... ... nuoA PA2636 PA2635 nuoB nuoD nuoE nuoF nuoG nuoH nuoI nuoJ nuoK nuoL nuoM nuoN PA2650
411 8633080
GCCAATGATATTGATTTGC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4515 , PA4514 , PA4516 , PA4517 , PA4518 , speC (PA4519)
... ... PA4515 PA4514 PA4516 PA4517 PA4518 speC
411 8633080
GGAAATGAGAATCATTATT Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) prrF1 (PA4704.1) , cbpA (PA4704) , PA4703 , prrF2 (PA4704.2) , PA4705 , PA4706 , PA4707 , phuT (PA4708) , PA4709
... ... prrF1 cbpA PA4703 prrF2 PA4705 PA4706 PA4707 phuT PA4709
411 8633080
GTAATTGACAATCATTATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) pvdS (PA2426) , pvdG (PA2425) , pvdL (PA2424) , PA2427 , PA2428
... ... pvdS pvdG pvdL PA2427 PA2428
411 8633080
GTTATTGAGAATCATTGGC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) cyoE (PA1321) , cyoD (PA1320) , cyoC (PA1319) , cyoB (PA1318) , cyoA (PA1317) , PA1322 , PA1323 , PA1324 , PA1324.1 , PA1325 , ilvA2 (PA1326) , PA1327 , PA1328 , PA1329 , PA1330 , PA1331
... ... cyoE cyoD cyoC cyoB cyoA PA1322 PA1323 PA1324 PA1324.1 PA1325 ilvA2 PA1327 PA1328 PA1329 PA1330 PA1331
411 8633080
TAAATTTATAATAATTCTC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) fpvI (PA2387) , pvdA (PA2386) , pvdQ (PA2385) , fpvR (PA2388) , pvdR (PA2389) , pvdT (PA2390) , opmQ (PA2391) , pvdP (PA2392)
... ... fpvI pvdA pvdQ fpvR pvdR pvdT opmQ pvdP
411 8633080
TCCAATGCAAATCAATATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4515 , PA4514 , PA4516 , PA4517 , PA4518 , speC (PA4519)
... ... PA4515 PA4514 PA4516 PA4517 PA4518 speC
411 8633080
TTTATCGCAACTGATTATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4513 , PA4514
... ... PA4513 PA4514
411 8633080
TTTTATGATAATGATTTTC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA3410 , PA3409 , PA3411 , PA3412
... ... PA3410 PA3409 PA3411 PA3412
411 8633080
ACGAACGTGAATCATTCTC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) pfeR (PA2686) , PA2685 , PA2684 , pfeS (PA2687) , pfeA (PA2688) , PA2689
... ... pfeR PA2685 PA2684 pfeS pfeA PA2689
412 8633080
CTGAATGATAATAATTATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) tonB1 (PA5531) , PA5532 , PA5533
... ... tonB1 PA5532 PA5533
412 8633080
GATAATGAGAATAGTTATT Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) prrF2 (PA4704.2) , prrF1 (PA4704.1) , cbpA (PA4704) , PA4703 , PA4705 , PA4706 , PA4707 , phuT (PA4708) , PA4709
... ... prrF2 prrF1 cbpA PA4703 PA4705 PA4706 PA4707 phuT PA4709
412 8633080
TCTTCTGATAATTATTATC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) tonB1 (PA5531) , PA5532 , PA5533
... ... tonB1 PA5532 PA5533
412 8633080
TGTAATAATAACTATTCTC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) prrF2 (PA4704.2) , prrF1 (PA4704.1) , cbpA (PA4704) , PA4703 , PA4705 , PA4706 , PA4707 , phuT (PA4708) , PA4709
... ... prrF2 prrF1 cbpA PA4703 PA4705 PA4706 PA4707 phuT PA4709
412 8633080
GATATTAATACCCATTTCA Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) PA2223 , PA2222 , PA2224
... ... PA2223 PA2222 PA2224
412 8633080
GTAATTGACAATCATTATC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdS (PA2426) , PA2428 , PA2427 , pvdL (PA2424) , pvdG (PA2425)
... ... pvdS PA2428 PA2427 pvdL pvdG
407 12207696
GATAATAAGAATTATTCTC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4570 , ispB (PA4569)
... ... PA4570 ispB
407 12207696
GACATTGAGATTCAATAAC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) hemO (PA0672) , PA0673 , PA0669 , PA0670 , PA0671
... ... hemO PA0673 PA0669 PA0670 PA0671
407 12207696
GCGAATGATAATACATATC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA1301 , PA1300 , PA1309 , PA1308 , PA1307 , PA1306 , PA1305 , PA1304 , PA1303 , PA1302 , PA1296 , PA1297 , PA1298 , PA1299
... ... PA1301 PA1300 PA1309 PA1308 PA1307 PA1306 PA1305 PA1304 PA1303 PA1302 PA1296 PA1297 PA1298 PA1299
407 12207696
TGTAATAAGAATCAGTCTC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) hasAp (PA3407) , hasR (PA3408) , PA3412 , PA3411 , PA3410 , PA3409
... ... hasAp hasR PA3412 PA3411 PA3410 PA3409
407 12207696
AAAAACGAGAATTATTCGC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0472 , PA0471 , PA0476 , PA0475 , PA0474 , PA0473 , fiuA (PA0470)
... ... PA0472 PA0471 PA0476 PA0475 PA0474 PA0473 fiuA
407 12207696
GCAAATGCTAATCATTCGC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA2034 , PA2033 , PA2035 , PA2032
... ... PA2034 PA2033 PA2035 PA2032
407 12207696
ACGATTGCTAATCAATCTT Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0930 , PA0929 , PA0922.1 , dinB (PA0923) , PA0924 , PA0925 , PA0926 , ldhA (PA0927) , gacS (PA0928)
... ... PA0930 PA0929 PA0922.1 dinB PA0924 PA0925 PA0926 ldhA gacS
407 12207696
GCTGATTACCATCATGATG Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4359 , PA4357 , PA4358 , PA4354 , PA4355 , xenB (PA4356)
... ... PA4359 PA4357 PA4358 PA4354 PA4355 xenB
407 12207696
GCTAATGCAAATAATTATC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) phuT (PA4708) , PA4709 , PA4713 , PA4712 , PA4711 , phuR (PA4710) , PA4703 , cbpA (PA4704) , prrF1 (PA4704.1) , prrF2 (PA4704.2) , PA4705 , PA4706 , PA4707
... ... phuT PA4709 PA4713 PA4712 PA4711 phuR PA4703 cbpA prrF1 prrF2 PA4705 PA4706 PA4707
407 12207696
TCCAATGCAAATCAATATC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4516 , PA4515 , speC (PA4519) , PA4518 , PA4517 , PA4514
... ... PA4516 PA4515 speC PA4518 PA4517 PA4514
407 12207696
GATAATTATTTGCATTAGC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) phuR (PA4710) , PA4713 , PA4712 , PA4711 , PA4703 , cbpA (PA4704) , prrF1 (PA4704.1) , prrF2 (PA4704.2) , PA4705 , PA4706 , PA4707 , phuT (PA4708) , PA4709
... ... phuR PA4713 PA4712 PA4711 PA4703 cbpA prrF1 prrF2 PA4705 PA4706 PA4707 phuT PA4709
407 12207696
AAAAATGCAAATCTTTCGC Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) icmP (PA4370) , bifA (PA4367) , PA4368 , PA4369
... ... icmP bifA PA4368 PA4369
407 12207696
GATAATGAGATTGATTATT Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4467 , sodM (PA4468) , PA4469 , fumC1 (PA4470) , PA4471 , mreB (PA4481) , mreC (PA4480) , mreD (PA4479) , PA4478 , cafA (PA4477) , PA4476 , PA4475 , PA4474 , PA4473 , pmbA (PA4472) , rpoN (PA4462) , PA4463 , ptsN (PA4464) , PA4465 , PA4466
... ... 5000000 PA4467 sodM PA4469 fumC1 PA4471 mreB mreC mreD PA4478 cafA PA4476 PA4475 PA4474 PA4473 pmbA rpoN PA4463 ptsN PA4465 PA4466
407 12207696
GAAGATGGTAATTAATTGC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0968 , PA0976.1 , PA0976 , PA0975 , PA0974 , oprL (PA0973) , tolB (PA0972) , tolA (PA0971) , tolR (PA0970) , tolQ (PA0969) , aspS (PA0963) , pmpR (PA0964) , ruvC (PA0965) , ruvA (PA0966) , ruvB (PA0967) , PA0977
... ... PA0968 PA0976.1 PA0976 PA0975 PA0974 oprL tolB tolA tolR tolQ aspS pmpR ruvC ruvA ruvB PA0977
408 12207696
CTTGATGAGAATTATTATA Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fpvI (PA2387) , pvdP (PA2392) , opmQ (PA2391) , pvdT (PA2390) , pvdR (PA2389) , fpvR (PA2388) , pvdQ (PA2385) , pvdA (PA2386)
... ... fpvI pvdP opmQ pvdT pvdR fpvR pvdQ pvdA
408 12207696
CTGAATGATAATAATTATC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) tonB1 (PA5531) , PA5533 , PA5532
... ... tonB1 PA5533 PA5532
408 12207696
CATAATGATAAGCATTATC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4220 , fptA (PA4221) , pchE (PA4226) , pchF (PA4225) , pchG (PA4224) , PA4223 , PA4222
... ... PA4220 fptA pchE pchF pchG PA4223 PA4222
408 12207696
ACGAATGATAAGAAATCTC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA5217 , PA5228 , ssrS (PA5227.1) , PA5227 , PA5226 , PA5225 , pepP (PA5224) , ubiH (PA5223) , PA5222 , PA5221 , PA5220 , PA5219 , PA5218 , PA5216
... ... PA5217 PA5228 ssrS PA5227 PA5226 PA5225 pepP ubiH PA5222 PA5221 PA5220 PA5219 PA5218 PA5216
408 12207696
AATAATGAGAATGATTGTC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3530 , PA3529
... ... PA3530 PA3529
408 12207696
GACAATGCGATTCATTATC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) foxI (PA2468) , foxR (PA2467) , foxA (PA2466) , PA2465 , PA2464 , PA2469 , gtdA (PA2470) , PA2471 , PA2472 , PA2473 , PA2474 , PA2475 , dsbG (PA2476) , PA2477 , PA2478
... ... foxI foxR foxA PA2465 PA2464 PA2469 gtdA PA2471 PA2472 PA2473 PA2474 PA2475 dsbG PA2477 PA2478
408 12207696
GATAATGGCGATCTTCATC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdQ (PA2385) , pvdA (PA2386) , fpvI (PA2387)
... ... pvdQ pvdA fpvI
408 12207696
GCAAATGAAAACTATTATC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4896 , PA4895 , PA4894 , ureG (PA4893) , ureF (PA4892) , ureE (PA4891) , PA4897 , opdK (PA4898) , PA4899 , PA4900 , mdlC (PA4901) , PA4902 , PA4903
... ... PA4896 PA4895 PA4894 ureG ureF ureE PA4897 opdK PA4899 PA4900 mdlC PA4902 PA4903
408 12207696
GGAAATGAGATTTATTATC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pchR (PA4227) , pchD (PA4228) , pchC (PA4229) , pchB (PA4230) , pchA (PA4231) , ssb (PA4232) , PA4233
... ... pchR pchD pchC pchB pchA ssb PA4233
408 12207696
TAAAATGATAACTATTATC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3899 , PA3900 , PA3898 , PA3897 , PA3896 , PA3895 , fecA (PA3901) , PA3902
... ... PA3899 PA3900 PA3898 PA3897 PA3896 PA3895 fecA PA3902
408 12207696
TAAATTTATAATAATTCTC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fpvI (PA2387) , pvdA (PA2386) , pvdQ (PA2385) , fpvR (PA2388) , pvdR (PA2389) , pvdT (PA2390) , opmQ (PA2391) , pvdP (PA2392)
... ... fpvI pvdA pvdQ fpvR pvdR pvdT opmQ pvdP
408 12207696
TTTTATGATAATGATTTTC Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3410 , PA3409 , PA3411 , PA3412
... ... PA3410 PA3409 PA3411 PA3412
408 12207696
CCAAATGGGAATGACTCTC Experimental technique details FURTA (ECO:0005633) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) PA4156 , PA4155 , PA4157 , fepC (PA4158) , fepB (PA4159) , fepD (PA4160) , fepG (PA4161) , PA4162
... ... PA4156 PA4155 PA4157 fepC fepB fepD fepG PA4162
523 21546589

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

TCTTCTGATAATTATTATC
CTGAATGATAATAATTATC
ACGAACGTGAATCATTCTC
GGAAATGAGAATCATTATT
GATAATGAGAATAGTTATT
GAAAACAATAATCAATCTC
GATAATGAGATTGATTATT
CAAAACGCATATCTGAATC
GATAATTATTTGCATTAGC
AAAAACGAGAATTATTCGC
ACGATTGAAAATCATTATC
ACGATTGCTAATCAATCTT
ATAATTGAGAATCGTTATT
CTGAATGAAACCCAATCTT
CTTGATGAGAATTATTATA
GAAAACAATAATCAATCTC
GAAGATGGTAATTAATTGC
GACATTGAGATTCAATAAC
GCAAACGATATTCATTATC
GCCAATGATATTGATTTGC
GGAAATGAGAATCATTATT
GTAATTGACAATCATTATC
GTTATTGAGAATCATTGGC
TAAATTTATAATAATTCTC
TCCAATGCAAATCAATATC
TTTATCGCAACTGATTATC
TTTTATGATAATGATTTTC
ACGAACGTGAATCATTCTC
CTGAATGATAATAATTATC
GATAATGAGAATAGTTATT
TCTTCTGATAATTATTATC
TGTAATAATAACTATTCTC
GATATTAATACCCATTTCA
GTAATTGACAATCATTATC
GATAATAAGAATTATTCTC
GACATTGAGATTCAATAAC
GCGAATGATAATACATATC
TGTAATAAGAATCAGTCTC
AAAAACGAGAATTATTCGC
GCAAATGCTAATCATTCGC
ACGATTGCTAATCAATCTT
GCTGATTACCATCATGATG
GCTAATGCAAATAATTATC
TCCAATGCAAATCAATATC
GATAATTATTTGCATTAGC
AAAAATGCAAATCTTTCGC
GATAATGAGATTGATTATT
GAAGATGGTAATTAATTGC
CTTGATGAGAATTATTATA
CTGAATGATAATAATTATC
CATAATGATAAGCATTATC
ACGAATGATAAGAAATCTC
AATAATGAGAATGATTGTC
GACAATGCGATTCATTATC
GATAATGGCGATCTTCATC
GCAAATGAAAACTATTATC
GGAAATGAGATTTATTATC
TAAAATGATAACTATTATC
TAAATTTATAATAATTCTC
TTTTATGATAATGATTTTC
CCAAATGGGAATGACTCTC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TCTTCTGATAATTATTATC
CTGAATGATAATAATTATC
GAGAATGATTCACGTTCGT
AATAATGATTCTCATTTCC
GATAATGAGAATAGTTATT
GAGATTGATTATTGTTTTC
AATAATCAATCTCATTATC
GATTCAGATATGCGTTTTG
GCTAATGCAAATAATTATC
GCGAATAATTCTCGTTTTT
ACGATTGAAAATCATTATC
ACGATTGCTAATCAATCTT
ATAATTGAGAATCGTTATT
CTGAATGAAACCCAATCTT
CTTGATGAGAATTATTATA
GAGATTGATTATTGTTTTC
GCAATTAATTACCATCTTC
GTTATTGAATCTCAATGTC
GATAATGAATATCGTTTGC
GCAAATCAATATCATTGGC
AATAATGATTCTCATTTCC
GTAATTGACAATCATTATC
GTTATTGAGAATCATTGGC
GAGAATTATTATAAATTTA
TCCAATGCAAATCAATATC
TTTATCGCAACTGATTATC
TTTTATGATAATGATTTTC
GAGAATGATTCACGTTCGT
CTGAATGATAATAATTATC
GATAATGAGAATAGTTATT
TCTTCTGATAATTATTATC
GAGAATAGTTATTATTACA
GATATTAATACCCATTTCA
GTAATTGACAATCATTATC
GAGAATAATTCTTATTATC
GTTATTGAATCTCAATGTC
GCGAATGATAATACATATC
GAGACTGATTCTTATTACA
GCGAATAATTCTCGTTTTT
GCGAATGATTAGCATTTGC
ACGATTGCTAATCAATCTT
CATCATGATGGTAATCAGC
GCTAATGCAAATAATTATC
TCCAATGCAAATCAATATC
GCTAATGCAAATAATTATC
GCGAAAGATTTGCATTTTT
AATAATCAATCTCATTATC
GCAATTAATTACCATCTTC
CTTGATGAGAATTATTATA
CTGAATGATAATAATTATC
CATAATGATAAGCATTATC
ACGAATGATAAGAAATCTC
GACAATCATTCTCATTATT
GATAATGAATCGCATTGTC
GATAATGGCGATCTTCATC
GCAAATGAAAACTATTATC
GATAATAAATCTCATTTCC
TAAAATGATAACTATTATC
GAGAATTATTATAAATTTA
TTTTATGATAATGATTTTC
CCAAATGGGAATGACTCTC
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.