Fur regulon and binding site collection in Actinobacillus pleuropneumoniae serovar 7 str. AP76

Fur - UniProtKB: B3H1Z1 regulon and binding site collection of Actinobacillus pleuropneumoniae serovar 7 str. AP76

Sites are listed as curated.

GATAATGATTTTCATTAAC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GATAATGATTTTCATTAAC

Motif structure	Inverted repeat
GC-content	21.05%
Regulatory mode	Activation	Repression	Dual	Not specified
Regulatory mode	100%	0%	0%	0%
TF conformation	Monomer	Dimer	Tetramer	Other	Not specified
TF conformation	0%	100%	0%	0%	0%
Binding site type	Motif-associated	Variable-motif-associated	Non-motif-associated
Binding site type	1	0	0

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Genome	TF	TF conformation	Site sequence	Site location	Experimental techniques	Gene regulation	Curations	PMIDs
NC_010939.1	B3H1Z1	dimer	GATAATGATTTTCATTAAC	-[1823333:1823351]	Experimental technique details Visual sequence inspection (nan) Visual sequence inspection - nan Visual inspection of promoter region to identify putative binding sites based on previous knowledge - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) Western blot (quantitative) expression analysis - ECO:0000279 A Western blot (also frequently called immunoblot) is a gel-based technique used to determine the presence of specific proteins in a sample by means of separation (through gel electrophoresis) and detection (using a protein-specific antibody). Less frequent than the equivalent RNA Northern blot, it is typically used in TF-binding site analysis to validate differential regulation of target genes.	APP7_1631 , APP7_1629 , APP7_1633 , APP7_1632 , APP7_1630 , APP7_1634	259	15908404

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.

Sites are listed as curated.

GATAATGATTTTCATTAAC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GATAATGATTTTCATTAAC

To generate the weblogo, aligned binding sites are used.

	Download data in FASTA format.
	Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
	Download raw data in TSV format. All reported sites are exported individually.
	Download data in Attribute-Relation File Format (ARFF).
	Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
	Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
	Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.