LuxO - UniProtKB: A7MVC2 regulon and binding site collection of Vibrio campbellii ATCC BAA-1116


Sites are listed as curated.

TTGCATTTTGCAA
TTGCATAATGCAA
TTGCAATTTGCAA
TTGCATTTTGCAA
TTGCAAAATGCGT
TTGCGATTTGCAA
TTGCAATATGCAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TTGCATTTTGCAA
TTGCATTATGCAA
TTGCAATTTGCAA
TTGCATTTTGCAA
ACGCATTTTGCAA
TTGCGATTTGCAA
TTGCAATATGCAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
TTGCATTTTGCAA Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VIBHAR_06697 , VIBHAR_06698
... ... VIBHAR_06697 VIBHAR_06698
942 17234887
TTGCATAATGCAA Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VIBHAR_04846
... ... VIBHAR_04846
942 17234887
TTGCAATTTGCAA Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VIBHAR_05322
... ... VIBHAR_05322
942 17234887
TTGCATTTTGCAA Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VIBHAR_06697 , VIBHAR_06698
... ... VIBHAR_06697 VIBHAR_06698
942 17234887
TTGCAAAATGCGT Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VIBHAR_06697 , VIBHAR_06698
... ... VIBHAR_06697 VIBHAR_06698
942 17234887
TTGCGATTTGCAA Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VIBHAR_05886 , VIBHAR_05885 , VIBHAR_05884 , VIBHAR_05883 , VIBHAR_05882
... ... VIBHAR_05886 VIBHAR_05885 VIBHAR_05884 VIBHAR_05883 VIBHAR_05882
942 17234887
TTGCAATATGCAT Experimental technique details Ad-hoc quantitative phenotype observation (ECO:0005676) - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) VIBHAR_05886 , VIBHAR_05885 , VIBHAR_05884 , VIBHAR_05883 , VIBHAR_05882
... ... VIBHAR_05886 VIBHAR_05885 VIBHAR_05884 VIBHAR_05883 VIBHAR_05882
942 17234887

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

TTGCATTTTGCAA
TTGCATAATGCAA
TTGCAATTTGCAA
TTGCATTTTGCAA
TTGCAAAATGCGT
TTGCGATTTGCAA
TTGCAATATGCAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TTGCATTTTGCAA
TTGCATTATGCAA
TTGCAATTTGCAA
TTGCATTTTGCAA
ACGCATTTTGCAA
TTGCGATTTGCAA
TTGCAATATGCAT
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.