BldD - UniProtKB: Q7AKQ8 regulon and binding site collection of Streptomyces coelicolor A3(2)


Sites are listed as curated.

GGCACTCTACGTGAG
TTCACTCTGCGGAAC
AGTACTCATGGTGAC
CTCACTCCTTGTGAT
AACACTCAGAGGGGT
TTCACCCTATGTGAT
CTTACGGGGTGTGAC
ATCACCCAGAGCGAT
GTCACGCTACGCTCA
GCCACGCTGAGTGAC
TTTACTATGAGTGAC
TGCACGAAGCGTTAT
CGTACTGCACGTGAT
GTAACGCTGCGTAAC
CTCACAGTGAGTTAC
GTGACTGATCGTCAC
GCCACGCGAAGTCGC
TGAACTCGCGGTGGC
ATGACTCACCGTGAC
GTAACTCTCCGCGAC
ACGACGCTGCGTGGG
AATACGCAAGGTTAC
GTCACGCTGCGTGAC
GCAACGCTTCGTGAT
AGTGATCACC
AGTCACGCTACGCTCACG
AGCGACGAAGAGTCACC
AGTGCCTGCACGAAGCGTTATTCTCC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GGCACTCTACGTGAG
TTCACTCTGCGGAAC
AGTACTCATGGTGAC
CTCACTCCTTGTGAT
AACACTCAGAGGGGT
ATCACATAGGGTGAA
GTCACACCCCGTAAG
ATCGCTCTGGGTGAT
GTCACGCTACGCTCA
GTCACTCAGCGTGGC
GTCACTCATAGTAAA
ATAACGCTTCGTGCA
CGTACTGCACGTGAT
GTAACGCTGCGTAAC
GTAACTCACTGTGAG
GTGACTGATCGTCAC
GCGACTTCGCGTGGC
TGAACTCGCGGTGGC
ATGACTCACCGTGAC
GTAACTCTCCGCGAC
ACGACGCTGCGTGGG
AATACGCAAGGTTAC
GTCACGCTGCGTGAC
GCAACGCTTCGTGAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
GGCACTCTACGTGAG Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO4767 , SCO4768
... ... SCO4767 SCO4768
919 20979333
TTCACTCTGCGGAAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3034 , SCO3035 , SCO3036 , SCO3037 , SCO3038
... ... SCO3034 SCO3035 SCO3036 SCO3037 SCO3038
919 20979333
AGTACTCATGGTGAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1414 , SCO1415 , SCO1416
... ... SCO1414 SCO1415 SCO1416
919 20979333
CTCACTCCTTGTGAT Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3926
... ... SCO3926
919 20979333
AACACTCAGAGGGGT Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1540 , SCOt02 , SCO1541
... ... SCO1540 SCOt02 SCO1541
919 20979333
TTCACCCTATGTGAT Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) SCO2082 , SCO2081 , SCO2080 , SCO2079 , SCO2078 , SCO2077
... ... SCO2082 SCO2081 SCO2080 SCO2079 SCO2078 SCO2077
919 20979333
CTTACGGGGTGTGAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5820
... ... SCO5820
919 20979333
ATCACCCAGAGCGAT Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5621 , SCO5622
... ... SCO5621 SCO5622
919 20979333
GTCACGCTACGCTCA Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5621 , SCO5622
... ... SCO5621 SCO5622
919 20979333
GCCACGCTGAGTGAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO4677 , SCO4676 , SCO4675 , SCO4678 , SCO4679
... ... SCO4677 SCO4676 SCO4675 SCO4678 SCO4679
919 20979333
TTTACTATGAGTGAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5244 , SCO5243
... ... SCO5244 SCO5243
919 20979333
TGCACGAAGCGTTAT Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3323
... ... SCO3323
919 20979333
CGTACTGCACGTGAT Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3323
... ... SCO3323
919 20979333
GTAACGCTGCGTAAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1488 , pyrB (SCO1487) , pyrC (SCO1486) , SCO1485 , SCO1484 , carB (SCO1483) , SCO1482 , pyrF (SCO1481) , SCO1489
... ... SCO1488 pyrB pyrC SCO1485 SCO1484 carB SCO1482 pyrF SCO1489
919 20979333
CTCACAGTGAGTTAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1488 , pyrB (SCO1487) , pyrC (SCO1486) , SCO1485 , SCO1484 , carB (SCO1483) , SCO1482 , pyrF (SCO1481) , SCO1489
... ... SCO1488 pyrB pyrC SCO1485 SCO1484 carB SCO1482 pyrF SCO1489
919 20979333
GTGACTGATCGTCAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO4091
... ... SCO4091
919 20979333
GCCACGCGAAGTCGC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5749
... ... SCO5749
919 20979333
TGAACTCGCGGTGGC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5581 , SCO5582
... ... SCO5581 SCO5582
919 20979333
ATGACTCACCGTGAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1630 , SCO1629 , SCO1628 , SCO1627 , SCO1626
... ... SCO1630 SCO1629 SCO1628 SCO1627 SCO1626
919 20979333
GTAACTCTCCGCGAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3540 , SCOt28
... ... SCO3540 SCOt28
919 20979333
ACGACGCTGCGTGGG Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) SCO6733 , SCO6734 , SCO6735
... ... SCO6733 SCO6734 SCO6735
919 20979333
AATACGCAAGGTTAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO0762 , SCO0763
... ... SCO0762 SCO0763
919 20979333
GTCACGCTGCGTGAC Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) SCO3087
... ... SCO3087
919 20979333
GCAACGCTTCGTGAT Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO2791 , SCO2792
... ... SCO2791 SCO2792
919 20979333
AGTGATCACC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details S1 nuclease protection (ECO:0005666) SCO5621 , SCO5622
... ... SCO5621 SCO5622
920 11298292
AGTCACGCTACGCTCACG Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details S1 nuclease protection (ECO:0005666) SCO5621 , SCO5622
... ... SCO5621 SCO5622
920 11298292
AGCGACGAAGAGTCACC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details S1 nuclease protection (ECO:0005666) SCO3328 , SCO3327
... ... SCO3328 SCO3327
920 11298292
AGTGCCTGCACGAAGCGTTATTCTCC Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details S1 nuclease protection (ECO:0005666) SCO3323
... ... SCO3323
920 11298292

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

GGCACTCTACGTGAG
TTCACTCTGCGGAAC
AGTACTCATGGTGAC
CTCACTCCTTGTGAT
AACACTCAGAGGGGT
TTCACCCTATGTGAT
CTTACGGGGTGTGAC
ATCACCCAGAGCGAT
GTCACGCTACGCTCA
GCCACGCTGAGTGAC
TTTACTATGAGTGAC
TGCACGAAGCGTTAT
CGTACTGCACGTGAT
GTAACGCTGCGTAAC
CTCACAGTGAGTTAC
GTGACTGATCGTCAC
GCCACGCGAAGTCGC
TGAACTCGCGGTGGC
ATGACTCACCGTGAC
GTAACTCTCCGCGAC
ACGACGCTGCGTGGG
AATACGCAAGGTTAC
GTCACGCTGCGTGAC
GCAACGCTTCGTGAT
AGTGATCACC
AGTCACGCTACGCTCACG
AGCGACGAAGAGTCACC
AGTGCCTGCACGAAGCGTTATTCTCC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GGCACTCTACGTGAG
TTCACTCTGCGGAAC
AGTACTCATGGTGAC
CTCACTCCTTGTGAT
AACACTCAGAGGGGT
ATCACATAGGGTGAA
GTCACACCCCGTAAG
ATCGCTCTGGGTGAT
GTCACGCTACGCTCA
GTCACTCAGCGTGGC
GTCACTCATAGTAAA
ATAACGCTTCGTGCA
CGTACTGCACGTGAT
GTAACGCTGCGTAAC
GTAACTCACTGTGAG
GTGACTGATCGTCAC
GCGACTTCGCGTGGC
TGAACTCGCGGTGGC
ATGACTCACCGTGAC
GTAACTCTCCGCGAC
ACGACGCTGCGTGGG
AATACGCAAGGTTAC
GTCACGCTGCGTGAC
GCAACGCTTCGTGAT
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.