PerR - UniProtKB: Q2G282 regulon and binding site collection of Staphylococcus aureus subsp. aureus NCTC 8325


Sites are listed as curated.

AATTATAATTATTATAAAT
GATTAGAATTATTATAATT
GATTAGAATTATTATAATA
AATAATAATTATTATATAA
GATTTTAATTATTAGTAGG
AATTATAATTATTATTATT
GCATATAATTATTATTATT
TCATAAAATTATTATAATG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AATTATAATTATTATAAAT
GATTAGAATTATTATAATT
GATTAGAATTATTATAATA
TTATATAATAATTATTATT
GATTTTAATTATTAGTAGG
AATTATAATTATTATTATT
GCATATAATTATTATTATT
TCATAAAATTATTATAATG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_007795.1 Q2G282 not specified AATTATAATTATTATAAAT +[1269991:1270009] Experimental technique details Beta-gal reporter assay SAOUHSC_01327 , SAOUHSC_01326 , SAOUHSC_01325 , SAOUHSC_01324 , rpmG (SAOUHSC_01328)
    ... ... SAOUHSC_01327 SAOUHSC_01326 SAOUHSC_01325 SAOUHSC_01324 rpmG
    559 11349039
    NC_007795.1 Q2G282 not specified GATTAGAATTATTATAATT -[371894:371912] Experimental technique details Beta-gal reporter assay SAOUHSC_00365 , SAOUHSC_00364 , SAOUHSC_00363 , SAOUHSC_00362 , SAOUHSC_00366 , SAOUHSC_00367 , SAOUHSC_00368
    ... ... SAOUHSC_00365 SAOUHSC_00364 SAOUHSC_00363 SAOUHSC_00362 SAOUHSC_00366 SAOUHSC_00367 SAOUHSC_00368
    559 11349039
    NC_007795.1 Q2G282 not specified GATTAGAATTATTATAATA -[2203493:2203511] Experimental technique details Beta-gal reporter assay SAOUHSC_02381 , deoD (SAOUHSC_02380) , SAOUHSC_02382
    ... ... SAOUHSC_02381 deoD SAOUHSC_02382
    559 11349039
    NC_007795.1 Q2G282 not specified AATAATAATTATTATATAA -[1907687:1907705] Experimental technique details Beta-gal reporter assay SAOUHSC_01997 , SAOUHSC_01998 , SAOUHSC_01999 , SAOUHSC_02000
    ... ... SAOUHSC_01997 SAOUHSC_01998 SAOUHSC_01999 SAOUHSC_02000
    559 11349039
    NC_007795.1 Q2G282 not specified GATTTTAATTATTAGTAGG -[1518394:1518412] Experimental technique details Beta-gal reporter assay SAOUHSC_01592 , SAOUHSC_01591 , SAOUHSC_01590 , SAOUHSC_01589 , SAOUHSC_01588 , SAOUHSC_01587 , SAOUHSC_01586 , SAOUHSC_01585 , SAOUHSC_01593 , SAOUHSC_01594
    ... ... SAOUHSC_01592 SAOUHSC_01591 SAOUHSC_01590 SAOUHSC_01589 SAOUHSC_01588 SAOUHSC_01587 SAOUHSC_01586 SAOUHSC_01585 SAOUHSC_01593 SAOUHSC_01594
    559 11349039
    NC_007795.1 Q2G282 not specified AATTATAATTATTATTATT +[1981524:1981542] Experimental technique details Beta-gal reporter assay SAOUHSC_02108 , SAOUHSC_02107 , SAOUHSC_02106 , SAOUHSC_02105 , SAOUHSC_02104 , SAOUHSC_02109
    ... ... SAOUHSC_02108 SAOUHSC_02107 SAOUHSC_02106 SAOUHSC_02105 SAOUHSC_02104 SAOUHSC_02109
    559 11349039
    NC_007795.1 Q2G282 not specified GCATATAATTATTATTATT +[766302:766320] Experimental technique details Beta-gal reporter assay SAOUHSC_00785 , SAOUHSC_00784 , SAOUHSC_00783 , SAOUHSC_00782 , SAOUHSC_00781
    ... ... SAOUHSC_00785 SAOUHSC_00784 SAOUHSC_00783 SAOUHSC_00782 SAOUHSC_00781
    559 11349039
    NC_007795.1 Q2G282 not specified TCATAAAATTATTATAATG -[1909195:1909213] Experimental technique details Beta-gal reporter assay SAOUHSC_01999 , SAOUHSC_01998 , SAOUHSC_01997 , SAOUHSC_02000
    ... ... SAOUHSC_01999 SAOUHSC_01998 SAOUHSC_01997 SAOUHSC_02000
    559 11349039

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AATTATAATTATTATAAAT
    GATTAGAATTATTATAATT
    GATTAGAATTATTATAATA
    AATAATAATTATTATATAA
    GATTTTAATTATTAGTAGG
    AATTATAATTATTATTATT
    GCATATAATTATTATTATT
    TCATAAAATTATTATAATG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AATTATAATTATTATAAAT
    GATTAGAATTATTATAATT
    GATTAGAATTATTATAATA
    TTATATAATAATTATTATT
    GATTTTAATTATTAGTAGG
    AATTATAATTATTATTATT
    GCATATAATTATTATTATT
    TCATAAAATTATTATAATG
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.