Curation Information

Publication

Purification of the LysR family regulator, ClcR, and its interaction with the Pseudomonas putida clcABD chlorocatechol operon promoter.;Coco WM, Parsek MR, Chakrabarty AM;Journal of bacteriology 1994 Sep; 176(17):5530-3 [8071232]

TF

ClcR [A0A024HKB0, view regulon]

Reported TF sp.

Pseudomonas putida plasmid pAC27

Reported site sp.

Pseudomonas putida plasmid pAC27

Created by

Matthew Coveyou

Curation notes

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Experimental Process

EMSA was used to determine the purity of isolated clcR. DNase I protection identified the binding region on the clcABD promoter.

Transcription Factor Binding Sites

• Sites reported in the paper
• Sites matched in the genome

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.