Curation Information

Publication
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites.;Wade JT, Reppas NB, Church GM, Struhl K;Genes & development 2005 Nov 1; 19(21):2619-30 [16264194]
TF
LexA [P0A7C2, view regulon]
Reported TF sp.
Escherichia coli str. K-12 substr. MG1655
Reported site sp.
Escherichia coli str. K-12 substr. MG1655
Created by
Erill Lab
Curation notes
-

Experimental Process

Assessment of in-vitro binding with GST pull down and qPCR.

Transcription Factor Binding Sites


TACTGTATATAAAACCAGTT
TGCTGTATATACTCACAGCA
TACTGTATATAAAAACAGTA
GACTGTATAAAACCACAGCC
CGCTGGATATCTATCCAGCA
TACTGTATATAAAACCAGTT
TGCTGTATATACTCACAGCA
TACTGTATATAAAAACAGTA
GACTGTATAAAACCACAGCC
CGCTGGATATCTATCCAGCA

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
TACTGTATATAAAACCAGTT
... ... nadK recN
Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) - repressor dimer
TGCTGTATATACTCACAGCA
... ... dinF lexA dgkA
Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) - repressor dimer
TACTGTATATAAAAACAGTA
... ... umuD hlyE dsbB umuC
Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) - repressor dimer
GACTGTATAAAACCACAGCC
... ... araD polB
Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) - repressor dimer
CGCTGGATATCTATCCAGCA
... ... ruvB yobI ruvA
Experimental technique details GST pull-down assay (ECO:0005640) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) - repressor dimer