Curation Information

Publication
Vibrio cholerae AphA uses a novel mechanism for virulence gene activation that involves interaction with the LysR-type regulator AphB at the tcpPH promoter.;Kovacikova G, Lin W, Skorupski K;Molecular microbiology 2004 Jul; 53(1):129-42 [15225309]
TF
AphB [Q9KT56, view regulon]
Reported TF sp.
Vibrio cholerae O395
Reported site sp.
Vibrio cholerae O395
Created by
Erill Lab
Curation notes
-

Experimental Process

EMSA on known site

The paper reports that TF forms complex with other proteins for binding with reported sites.

AphA-AphB interaction

Transcription Factor Binding Sites


TGCAAAATTAGATTGCA
TGCAAAATTAGATTGCA

Gene Regulation

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Site sequence Regulated genes Gene diagram Experimental techniques TF function TF type
TGCAAAATTAGATTGCA tcpP,
... ... tcpP tcpI tcpH
Experimental technique details EMSA (ECO:0001807) - activator dimer