A genome-wide computational search for pip-boxes was performed, and the results validated by gus-reporter assays with hrpX-deletion mutant in the promoters of six genes that had been shown to induce HR response in plants through translocation assays.
Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.
Site sequence | Regulated genes | Gene diagram | Experimental techniques | TF function | TF type |
---|---|---|---|---|---|
TTCGGAGCAATAACCATCCGTTCGC | XC_2994, |
|
activator | not specified | |
TTCGCACATGAAAATAAAGGTTCGC | XC_2995, |
|
activator | not specified | |
TTCGCTAGCTCGCGCAGAGTTTCGC | XC_3160 |
|
activator | not specified | |
TTCGTGTCGTTGCAACGCCCTTCGC | XC_3177, |
|
activator | not specified | |
TTCGTCGTCCCGGTCAATTCTTCGG | XC_3802, |
|
activator | not specified | |
TTCGCCATACCGATGAAGTCTTCGC | XC_4273, |
|
activator | not specified |