Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00029960
Genome
Peptoclostridium difficile - NC_009089.1
TF
CcpA [UniProtKB:Q18AR8, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
AGGAAATAGTTAACTT + [1531870, 1531885] 22989714 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) - 936

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... CD630_13210 dapG tepA ftsK CD630_13250 rimO pgsA
Gene Locus tag Description
CD630_13210 CD630_13210 sporulation protein
dapG CD630_13220 aspartate kinase I
tepA CD630_13230 protein export-enhancing factor
ftsK CD630_13240 DNA FtsK/SpoIIIE translocase
CD630_13250 CD630_13250 tRNA 2-selenouridine synthase
rimO CD630_13260 30S ribosomal protein S12 methylthiotransferase
pgsA CD630_13270 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase