Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_000221e0
Genome
Pseudomonas putida - NC_002947.3
TF
IHF [UniProtKB:P0A126, view regulon], [UniProtKB:P0A128, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
AACAACACGATG + [1471716, 1471727] 22510163 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - 790

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... algJ algF algA PP_1287 PP_1286 algK algE PP_1283 algX algL algI
Gene Locus tag Description
algJ PP_1279 alginate O-acetylation protein AlgJ
algF PP_1278 alginate O-acetyltransferase
algA PP_1277 mannose-1-phosphate guanylyltransferase
PP_1287 PP_1287 alginate biosynthesis protein Alg8
PP_1286 PP_1286 type IV pilus assembly PilZ
algK PP_1285 Sel1 domain-containing protein repeat-containing protein
algE PP_1284 outer membrane protein AlgE
PP_1283 PP_1283 carbohydrate-binding and sugar hydrolysis protein
algX PP_1282 alginate biosynthesis protein AlgX
algL PP_1281 poly(beta-D-mannuronate) lyase
algI PP_1280 alginate o-acetyltransferase AlgI