Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00009380
Genome
Geobacter sulfurreducens - NC_002939.5
TF
PilR [UniProtKB:Q74D24, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GGCAAAATTTGGCATG + [1642064, 1642079] 20708667 Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Regular expression search (ECO:0005662) - 449

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... pilA-N pilR pilS pilC pilT-4 pilB aroE GSU1489 GSU1488 ribF tatC rnr pilA-C xapA xapB GSU1500 xapD xapE xapF xapG xapH xapI xapJ GSU1508 GSU1509 GSU1510 GSU1510.1 GSU1511 GSU1512 GSU1513 GSU1514 GSUR026 thrS infC rpmI rplT pheS pheT ihfA-1 GSU1522 GSUR027 surE pcm rpoS apt GSUR028
Gene Locus tag Description
pilA-N GSU1496 hypothetical protein
pilR GSU1495 sigma-54-dependent transcriptional response regulator PilR
pilS GSU1494 sensor histidine kinase PilS, PAS domain-containing
pilC GSU1493 type IV pilus inner membrane protein PilC
pilT-4 GSU1492 twitching motility pilus retraction protein
pilB GSU1491 type IV pilus biogenesis ATPase PilB
aroE GSU1490 shikimate 5-dehydrogenase
GSU1489 GSU1489 polyprenyl-phospho-glycoside--protein O-glycosyltransferase
GSU1488 GSU1488 hypothetical protein
ribF GSU1487 riboflavin kinase and FAD synthetase
tatC GSU1486 twin-arginine translocation pathway protein TatC
rnr GSU1485 exoribonuclease R
pilA-C GSU1497 hypothetical protein
xapA GSU1498 hypothetical protein
xapB GSU1499 hypothetical protein
GSU1500 GSU1500 hypothetical protein
xapD GSU1501 ABC transporter ATP-binding protein
xapE GSU1502 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
xapF GSU1503 glycosyltransferase
xapG GSU1504 ABC transporter membrane protein, ABC-2 family
xapH GSU1505 ABC transporter ATP-binding protein
xapI GSU1506 SAM-dependent methyltransferase, FkbM family
xapJ GSU1507 ADP-heptose--lipopolysaccharide heptosyltransferase
GSU1508 GSU1508 hypothetical protein
GSU1509 GSU1509 glycosyltransferase
GSU1510 GSU1510 glycosyltransferase
GSU1510.1 GSU1510.1 glycosyltransferase
GSU1511 GSU1511 glycosyltransferase
GSU1512 GSU1512 hypothetical protein
GSU1513 GSU1513 SAM-dependent methyltransferase, type 11
GSU1514 GSU1514 ADP-heptose--lipopolysaccharide heptosyltransferase
GSUR026 GSUR026 tRNA
thrS GSU1515 threonyl-tRNA ligase
infC GSU1516 translation initiation factor IF-3
rpmI GSU1517 50S ribosomal protein L35
rplT GSU1518 50S ribosomal protein L20
pheS GSU1519 phenylalanyl-tRNA ligase subunit alpha
pheT GSU1520 phenylalanyl-tRNA ligase subunit beta
ihfA-1 GSU1521 integration host factor subunit alpha
GSU1522 GSU1522 MerR family transcriptional regulator
GSUR027 GSUR027 tRNA
surE GSU1523 5'(3')-nucleotidase/polyphosphatase
pcm GSU1524 protein-L-isoaspartate O-methyltransferase
rpoS GSU1525 RNA polymerase sigma-38 factor, stationary phase
apt GSU1526 adenine phosphoribosyltransferase
GSUR028 GSUR028 tRNA