Site information for: LexA in species Burkholderia thailandensis; genome accession: NC

Transcription Factor Binding Site Information

dbxref: CollecTF:EXPSITE_00007fe0
Genome: Burkholderia thailandensis - NC_007651.1
TF: LexA [UniProtKB:Q2SVP7, view regulon]

Supporting Evidence

Binding site	Location	Publication	Experimental techniques used	Curation
CTGGTTCGACGGCCAG	+ [488948, 488963]	23872555	Experimental technique details Consensus search (ECO:0005624) Consensus search - ECO:0005624 This is a weak form of in-silico search, in which the consensus sequence for the motif is compared to genomic positions and the number of mismatches (between candidate site and consensus) is used as a measure of site-quality. - Experimental technique details RNA-Seq (ECO:0005664) RNA-Seq - ECO:0005664 In RNA-seq, RNA is extracted from the cell at a given time and reverse transcribed to obtain cDNA. This cDNA is then sequenced. This provides a snapshot of the "transcriptome" of an organism at a given time. -	403

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Gene	Locus tag	Description
dnaE2	BTH_I0445	error-prone DNA polymerase
BTH_I0444	BTH_I0444	hypothetical protein
BTH_I0443	BTH_I0443	hypothetical protein
BTH_I0442	BTH_I0442	ABC transporter ATP-binding protein
BTH_I0441	BTH_I0441	ABC transporter permease
BTH_I0440	BTH_I0440	ABC transporter periplasmic substrate-binding protein