CifR - UniProtKB: Q9HZR6 regulon and binding site collection of Pseudomonas aeruginosa UCBPP-PA14


Sites are listed as curated.

TATTTGTATCGATCACTA
TATCTGTATCGGTCGCTA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TATTTGTATCGATCACTA
TATCTGTATCGGTCGCTA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_008463.1 Q9HZR6 not specified TATTTGTATCGATCACTA -[2282116:2282133] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) PA14_26140 , morB (PA14_26130) , PA14_26110 , PA14_26090
    ... ... PA14_26140 morB PA14_26110 PA14_26090
    736 22843844
    NC_008463.1 Q9HZR6 not specified TATCTGTATCGGTCGCTA +[2282060:2282077] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) morB (PA14_26130) , PA14_26110 , PA14_26090 , PA14_26140
    ... ... morB PA14_26110 PA14_26090 PA14_26140
    736 22843844

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TATTTGTATCGATCACTA
    TATCTGTATCGGTCGCTA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TATTTGTATCGATCACTA
    TATCTGTATCGGTCGCTA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.