CcpA - UniProtKB: Q9CF33 regulon and binding site collection of Lactococcus lactis subsp. cremoris MG1363


Sites are listed as curated.

TGTAAACCTTTTCA
AGTAACCGTTTACA
AGAAATCGCTAACA
TGTAACAGTTTACA
AGTAACCGGTATTA
TGAAAGAGCATACA
TGACAGAGTTTTCA
TTAAAACGTTTGAA
ATAAAACGCATACA
ATAAAGCGATTTCT
AGTAAGCGTATTCA
TGTAAACCTTTTCA
TGTAAGAGATATCT
TGAAAACTTTTACA
TGTAAACGATTCCA
TGAAATCATTAGCA
TGTAAGCGCAAGCA
TGTGAACGCTTAAA
TGTAATGGATTTCA
TGAAAGTGATAACA
TGCACACGTTATCT
TGGTAGCGGTTATA
TGTAAAAGCTTACA
TGAAAACCTTTGCA
TGAAAACGTTATAA
AGAAACCGCTTTCT
TGAAAACGTTTTTA
ATAAACCGTTTTCA
TGAAATCGCTATCA
AGTAATCGTTATCT
TGAAACAGTTATCA
ATAAAGCGTTTACA
TGAAAAAGGTAACA
TGAAAGCGAATAAA
AGTTAGCGCTTACA
TATCAGCGTTAACA
TGCCATCGTATTCA
TGAAAACGCTTTTT
AATAAGCGCTTACA
TGAAAAAGGTAACA
TGTAAGTATTTTCA
AGAAAATGTTTTCA
TGCAAGCGATTTGA
TGATATCGCTTCCA
GGTAATCGTTTACT
TGAAAGCGCAAACA
AAAAAGCGTATTCA
TTAATACGATTACA
TGAAAGCGTTAAGA
TGTAAAGGCTTAAA
TTAAAGCGGTTAAA
TGAAAACTCTAACA
TAAATACGCTTTCA
TGAATACGAATACA
TGAAATCGTTCACA
TGTAAGCGTTGATA
TTTAAGCGTTCACA
TGATATCGATAACA
TTTAAACGTTTACC
AGAATGCGTTTACA
TGTCAGCATTTTCA
TGTAATCGGTTACA
TGAAAGCACTGCCA
TGAAAGTGCTTGCA
TGATAACGCTGACA
AGAAAGCGTTTTAT
TGCGAACGCATTCA
AGAAAGCGGACTCA
TAGAAGCGATAACA
GGCAAACGTTATCA
TGTATGCGTTTTAA
AGAAAGGGTTTTCT
AGAAAGCGCTATAA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGTAAACCTTTTCA
AGTAACCGTTTACA
AGAAATCGCTAACA
TGTAAACTGTTACA
AGTAACCGGTATTA
TGTATGCTCTTTCA
TGAAAACTCTGTCA
TTAAAACGTTTGAA
TGTATGCGTTTTAT
AGAAATCGCTTTAT
AGTAAGCGTATTCA
TGTAAACCTTTTCA
AGATATCTCTTACA
TGTAAAAGTTTTCA
TGGAATCGTTTACA
TGAAATCATTAGCA
TGTAAGCGCAAGCA
TTTAAGCGTTCACA
TGAAATCCATTACA
TGTTATCACTTTCA
AGATAACGTGTGCA
TGGTAGCGGTTATA
TGTAAGCTTTTACA
TGAAAACCTTTGCA
TGAAAACGTTATAA
AGAAAGCGGTTTCT
TGAAAACGTTTTTA
TGAAAACGGTTTAT
TGAAATCGCTATCA
AGTAATCGTTATCT
TGATAACTGTTTCA
TGTAAACGCTTTAT
TGTTACCTTTTTCA
TTTATTCGCTTTCA
AGTTAGCGCTTACA
TGTTAACGCTGATA
TGAATACGATGGCA
TGAAAACGCTTTTT
TGTAAGCGCTTATT
TGTTACCTTTTTCA
TGTAAGTATTTTCA
TGAAAACATTTTCT
TCAAATCGCTTGCA
TGATATCGCTTCCA
GGTAATCGTTTACT
TGTTTGCGCTTTCA
TGAATACGCTTTTT
TGTAATCGTATTAA
TCTTAACGCTTTCA
TTTAAGCCTTTACA
TTTAACCGCTTTAA
TGTTAGAGTTTTCA
TGAAAGCGTATTTA
TGTATTCGTATTCA
TGAAATCGTTCACA
TGTAAGCGTTGATA
TTTAAGCGTTCACA
TGTTATCGATATCA
GGTAAACGTTTAAA
TGTAAACGCATTCT
TGAAAATGCTGACA
TGTAATCGGTTACA
TGAAAGCACTGCCA
TGAAAGTGCTTGCA
TGATAACGCTGACA
AGAAAGCGTTTTAT
TGAATGCGTTCGCA
AGAAAGCGGACTCA
TGTTATCGCTTCTA
TGATAACGTTTGCC
TGTATGCGTTTTAA
AGAAAACCCTTTCT
AGAAAGCGCTATAA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_009004.1 Q9CF33 not specified TGTAAACCTTTTCA -[764211:764224] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) ccpA (llmg_0775) , pepQ (llmg_0774) , trxB2 (llmg_0776)
    ... ... ccpA pepQ trxB2
    867 17028270
    NC_009004.1 Q9CF33 not specified AGTAACCGTTTACA -[1060273:1060286] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) glpK (llmg_1099) , glpD (llmg_1098) , glpF2 (llmg_1097) , rluC (llmg_1100)
    ... ... glpK glpD glpF2 rluC
    867 17028270
    NC_009004.1 Q9CF33 not specified AGAAATCGCTAACA +[1089040:1089053] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1127 , llmg_1128 , llmg_1129
    ... ... llmg_1127 llmg_1128 llmg_1129
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAACAGTTTACA -[1713777:1713790] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) noxB (llmg_1734) , sdaB (llmg_1733) , sdaA (llmg_1732) , copR (llmg_1731) , merP (llmg_1730)
    ... ... noxB sdaB sdaA copR merP
    867 17028270
    NC_009004.1 Q9CF33 not specified AGTAACCGGTATTA -[1845407:1845420] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) cydA (llmg_1864) , cydB (llmg_1863)
    ... ... cydA cydB
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAGAGCATACA +[1895596:1895609] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1915 , llmg_1916 , llmg_1917
    ... ... llmg_1915 llmg_1916 llmg_1917
    867 17028270
    NC_009004.1 Q9CF33 not specified TGACAGAGTTTTCA +[1896652:1896665] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1916 , llmg_1917
    ... ... llmg_1916 llmg_1917
    867 17028270
    NC_009004.1 Q9CF33 not specified TTAAAACGTTTGAA -[2243520:2243533] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) ackA1 (llmg_2289) , ackA2 (llmg_2288) , llmg_2286 , pyrH (llmg_2285)
    ... ... ackA1 ackA2 llmg_2286 pyrH
    867 17028270
    NC_009004.1 Q9CF33 not specified ATAAAACGCATACA -[2242413:2242426] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) ackA2 (llmg_2288) , llmg_2286 , pyrH (llmg_2285)
    ... ... ackA2 llmg_2286 pyrH
    867 17028270
    NC_009004.1 Q9CF33 not specified ATAAAGCGATTTCT +[2382930:2382943] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) adhE (llmg_2432)
    ... ... adhE
    867 17028270
    NC_009004.1 Q9CF33 not specified AGTAAGCGTATTCA +[133732:133745] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_tRNA_10
    ... ... llmg_tRNA_10
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAAACCTTTTCA -[764211:764224] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pepQ (llmg_0774) , ccpA (llmg_0775) , trxB2 (llmg_0776)
    ... ... pepQ ccpA trxB2
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAAGAGATATCT +[1012045:1012058] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) busAA (llmg_1048) , busAB (llmg_1049)
    ... ... busAA busAB
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAACTTTTACA -[2263384:2263397] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) arcB (llmg_2312) , arcD1 (llmg_2311) , arcC1 (llmg_2310) , arcC2 (llmg_2309)
    ... ... arcB arcD1 arcC1 arcC2
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAAACGATTCCA -[2264669:2264682] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) arcA (llmg_2313)
    ... ... arcA
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAATCATTAGCA +[994996:995009] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) trpE (llmg_1030) , trpG (llmg_1031) , trpD (llmg_1032)
    ... ... trpE trpG trpD
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAAGCGCAAGCA -[2425585:2425598] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) gntP (llmg_2467)
    ... ... gntP
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTGAACGCTTAAA +[751169:751182] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) udk (llmg_0762) , llmg_0761 , llmg_tRNA_35
    ... ... udk llmg_0761 llmg_tRNA_35
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAATGGATTTCA +[938159:938172] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) purQ (llmg_0975) , purL (llmg_0976) , purF (llmg_0977)
    ... ... purQ purL purF
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAGTGATAACA -[2116563:2116576] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) gmk (llmg_2155) , rpoZ (llmg_2154)
    ... ... gmk rpoZ
    867 17028270
    NC_009004.1 Q9CF33 not specified TGCACACGTTATCT -[2168307:2168320] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) purA (llmg_2201)
    ... ... purA
    867 17028270
    NC_009004.1 Q9CF33 not specified TGGTAGCGGTTATA +[26442:26455] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) mtlA (llmg_0022) , mtlR (llmg_0023) , mtlF (llmg_0024) , mtlD (llmg_0025)
    ... ... mtlA mtlR mtlF mtlD
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAAAAGCTTACA +[30849:30862] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) mtlD (llmg_0025)
    ... ... mtlD
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAACCTTTGCA -[150492:150505] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) glgB (llmg_0158)
    ... ... glgB
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAACGTTATAA +[428327:428340] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) ptcB (llmg_0437) , ptcA (llmg_0438) , llmg_0439
    ... ... ptcB ptcA llmg_0439
    867 17028270
    NC_009004.1 Q9CF33 not specified AGAAACCGCTTTCT +[430167:430180] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) ptcC (llmg_0440) , celA (llmg_0441)
    ... ... ptcC celA
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAACGTTTTTA +[446865:446878] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0453 , treR (llmg_0452) , llmg_0454 , trePP (llmg_0455)
    ... ... llmg_0453 treR llmg_0454 trePP
    867 17028270
    NC_009004.1 Q9CF33 not specified ATAAACCGTTTTCA -[722208:722221] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) malE (llmg_0739) , malF (llmg_0738) , malG (llmg_0737) , dexC (llmg_0740)
    ... ... malE malF malG dexC
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAATCGCTATCA +[738258:738271] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) arb (llmg_0751)
    ... ... arb
    867 17028270
    NC_009004.1 Q9CF33 not specified AGTAATCGTTATCT +[923492:923505] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) rpe2 (llmg_0957) , llmg_0956 , rpiB (llmg_0958) , llmg_0959
    ... ... rpe2 llmg_0956 rpiB llmg_0959
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAACAGTTATCA +[925294:925307] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0959 , llmg_0960
    ... ... llmg_0959 llmg_0960
    867 17028270
    NC_009004.1 Q9CF33 not specified ATAAAGCGTTTACA -[1444528:1444541] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1468 , llmg_1467
    ... ... llmg_1468 llmg_1467
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAAAGGTAACA -[1543916:1543929] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fruC (llmg_1569) , fruR (llmg_1570) , fruA (llmg_1568)
    ... ... fruC fruR fruA
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAGCGAATAAA -[1769738:1769751] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pmi (llmg_1789) , llmg_1790
    ... ... pmi llmg_1790
    867 17028270
    NC_009004.1 Q9CF33 not specified AGTTAGCGCTTACA +[2165064:2165077] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) chiC (llmg_2199) , chb (llmg_2200)
    ... ... chiC chb
    867 17028270
    NC_009004.1 Q9CF33 not specified TATCAGCGTTAACA -[2198279:2198292] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) galK (llmg_2235) , galT (llmg_2234) , galE (llmg_2233) , llmg_2232
    ... ... galK galT galE llmg_2232
    867 17028270
    NC_009004.1 Q9CF33 not specified TGCCATCGTATTCA -[2200597:2200610] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) galP (llmg_2237) , galM (llmg_2236) , galK (llmg_2235)
    ... ... galP galM galK
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAACGCTTTTT +[2381721:2381734] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_2431 , rpsB (llmg_2430) , tsf (llmg_2429)
    ... ... llmg_2431 rpsB tsf
    867 17028270
    NC_009004.1 Q9CF33 not specified AATAAGCGCTTACA -[2402023:2402036] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pgi (llmg_2448) , llmg_2449
    ... ... pgi llmg_2449
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAAAGGTAACA -[1543916:1543929] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fruR (llmg_1570) , fruC (llmg_1569) , fruA (llmg_1568)
    ... ... fruR fruC fruA
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAAGTATTTTCA +[1189435:1189448] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) dltD (llmg_1222) , dltB (llmg_1220) , dltC (llmg_1221)
    ... ... dltD dltB dltC
    867 17028270
    NC_009004.1 Q9CF33 not specified AGAAAATGTTTTCA -[1701647:1701660] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) rpsA (llmg_1724)
    ... ... rpsA
    867 17028270
    NC_009004.1 Q9CF33 not specified TGCAAGCGATTTGA -[1701981:1701994] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) mnmA (llmg_1725) , rpsA (llmg_1724) , llmg_1726 , llmg_1727 , llmg_1728
    ... ... mnmA rpsA llmg_1726 llmg_1727 llmg_1728
    867 17028270
    NC_009004.1 Q9CF33 not specified TGATATCGCTTCCA +[764560:764573] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) ccpA (llmg_0775) , pepQ (llmg_0774) , trxB2 (llmg_0776)
    ... ... ccpA pepQ trxB2
    867 17028270
    NC_009004.1 Q9CF33 not specified GGTAATCGTTTACT -[923612:923625] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0956 , rpe2 (llmg_0957) , rpiB (llmg_0958) , llmg_0959
    ... ... llmg_0956 rpe2 rpiB llmg_0959
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAGCGCAAACA -[2183501:2183514] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_2218
    ... ... llmg_2218
    867 17028270
    NC_009004.1 Q9CF33 not specified AAAAAGCGTATTCA -[1028645:1028658] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llrB (llmg_1068) , llmg_1069 , kinB (llmg_1067) , llmg_1066 , llmg_1070 , llmg_1071 , tnp1077 (llmg_pseudo_35) , llmg_1072 , llmg_1073
    ... ... llrB llmg_1069 kinB llmg_1066 llmg_1070 llmg_1071 tnp1077 llmg_1072 llmg_1073
    867 17028270
    NC_009004.1 Q9CF33 not specified TTAATACGATTACA -[2275630:2275643] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_2320 , snf (llmg_2319)
    ... ... llmg_2320 snf
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAGCGTTAAGA -[634208:634221] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) clpP (llmg_0638) , llmg_0639
    ... ... clpP llmg_0639
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAAAGGCTTAAA +[297967:297980] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) phnD (llmg_0312) , llmg_0311 , phnC (llmg_0313) , phnB (llmg_0314) , llmg_0315 , cpdC (llmg_0316) , llmg_0317 , tpx (llmg_0318)
    ... ... phnD llmg_0311 phnC phnB llmg_0315 cpdC llmg_0317 tpx
    867 17028270
    NC_009004.1 Q9CF33 not specified TTAAAGCGGTTAAA +[337108:337121] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fhuD (llmg_0349) , fhuR (llmg_0350)
    ... ... fhuD fhuR
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAACTCTAACA +[657848:657861] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0661 , tnp905 (llmg_pseudo_15)
    ... ... llmg_0661 tnp905
    867 17028270
    NC_009004.1 Q9CF33 not specified TAAATACGCTTTCA -[1523566:1523579] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fdhC (llmg_1551)
    ... ... fdhC
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAATACGAATACA +[173529:173542] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0185 , llmg_0186 , celB (llmg_0187) , llmg_0188 , llmg_0189 , bglS (llmg_0190) , dut (llmg_0191) , llmg_0192 , llmg_0193
    ... ... llmg_0185 llmg_0186 celB llmg_0188 llmg_0189 bglS dut llmg_0192 llmg_0193
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAATCGTTCACA +[182572:182585] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0194
    ... ... llmg_0194
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAAGCGTTGATA -[540011:540024] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pgmA (llmg_0541)
    ... ... pgmA
    867 17028270
    NC_009004.1 Q9CF33 not specified TTTAAGCGTTCACA -[751169:751182] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0761 , llmg_tRNA_35 , udk (llmg_0762)
    ... ... llmg_0761 llmg_tRNA_35 udk
    867 17028270
    NC_009004.1 Q9CF33 not specified TGATATCGATAACA +[960372:960385] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0995
    ... ... llmg_0995
    867 17028270
    NC_009004.1 Q9CF33 not specified TTTAAACGTTTACC -[1900619:1900632] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1920 , llmg_1919 , llmg_1918 , rpsT (llmg_1921)
    ... ... llmg_1920 llmg_1919 llmg_1918 rpsT
    867 17028270
    NC_009004.1 Q9CF33 not specified AGAATGCGTTTACA -[1979094:1979107] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) adhA (llmg_1991) , llmg_1990 , recQ (llmg_1992)
    ... ... adhA llmg_1990 recQ
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTCAGCATTTTCA -[1916902:1916915] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1936 , llmg_pseudo_59 , aroC (llmg_1934) , llmg_1933
    ... ... llmg_1936 llmg_pseudo_59 aroC llmg_1933
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTAATCGGTTACA +[420922:420935] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) cstA (llmg_0430)
    ... ... cstA
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAGCACTGCCA +[954599:954612] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0989
    ... ... llmg_0989
    867 17028270
    NC_009004.1 Q9CF33 not specified TGAAAGTGCTTGCA +[172511:172524] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0183 , llmg_0184 , llmg_0185
    ... ... llmg_0183 llmg_0184 llmg_0185
    867 17028270
    NC_009004.1 Q9CF33 not specified TGATAACGCTGACA -[297783:297796] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_0311 , phnD (llmg_0312) , phnC (llmg_0313) , phnB (llmg_0314) , llmg_0315 , cpdC (llmg_0316) , llmg_0317 , tpx (llmg_0318)
    ... ... llmg_0311 phnD phnC phnB llmg_0315 cpdC llmg_0317 tpx
    867 17028270
    NC_009004.1 Q9CF33 not specified AGAAAGCGTTTTAT +[1050252:1050265] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1090 , llmg_1091
    ... ... llmg_1090 llmg_1091
    867 17028270
    NC_009004.1 Q9CF33 not specified TGCGAACGCATTCA +[1052166:1052179] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1092 , llmg_1093 , llmg_1094 , llmg_1095 , llmg_1096
    ... ... llmg_1092 llmg_1093 llmg_1094 llmg_1095 llmg_1096
    867 17028270
    NC_009004.1 Q9CF33 not specified AGAAAGCGGACTCA +[1055584:1055597] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1096
    ... ... llmg_1096
    867 17028270
    NC_009004.1 Q9CF33 not specified TAGAAGCGATAACA -[1361137:1361150] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1388 , llmg_1387 , llmg_1386 , llmg_1385 , llmg_1384 , traD (llmg_1383) , llmg_1382 , llmg_1381 , llmg_1379 , llmg_1378 , llmg_1377 , ltrC (llmg_1376) , ltrD (llmg_1375)
    ... ... llmg_1388 llmg_1387 llmg_1386 llmg_1385 llmg_1384 traD llmg_1382 llmg_1381 llmg_1379 llmg_1378 llmg_1377 ltrC ltrD
    867 17028270
    NC_009004.1 Q9CF33 not specified GGCAAACGTTATCA -[1732275:1732288] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_1750 , llmg_1749 , llmg_1748
    ... ... llmg_1750 llmg_1749 llmg_1748
    867 17028270
    NC_009004.1 Q9CF33 not specified TGTATGCGTTTTAA +[2101493:2101506] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) ps412 (llmg_2131) , ps413 (llmg_2130) , ps414 (llmg_2129) , ps415 (llmg_2128)
    ... ... ps412 ps413 ps414 ps415
    867 17028270
    NC_009004.1 Q9CF33 not specified AGAAAGGGTTTTCT +[2175250:2175263] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_2211
    ... ... llmg_2211
    867 17028270
    NC_009004.1 Q9CF33 not specified AGAAAGCGCTATAA -[2241105:2241118] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) llmg_2286 , pyrH (llmg_2285)
    ... ... llmg_2286 pyrH
    867 17028270

    CcpA - UniProtKB: Q9CF33 regulon and binding site collection of Lactococcus lactis subsp. lactis Il1403


    Sites are listed as curated.

    TGATATCGCTTGCA
    TGACAACGAAGGCT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGATATCGCTTGCA
    TGACAACGAAGGCT

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_002662.1 Q9CF33 not specified TGATATCGCTTGCA +[176236:176249] Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Visual sequence inspection (nan) ybhE (L176316) , celB (L177520) , L200010
      ... ... ybhE celB L200010
      856 21262549
      NC_002662.1 Q9CF33 not specified TGACAACGAAGGCT +[177263:177276] Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details Visual sequence inspection (nan) celB (L177520) , ybhE (L176316) , L200010
      ... ... celB ybhE L200010
      856 21262549

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      TGATATCGCTTGCA
      TGACAACGAAGGCT
      TGTAAACCTTTTCA
      AGTAACCGTTTACA
      AGAAATCGCTAACA
      TGTAACAGTTTACA
      AGTAACCGGTATTA
      TGAAAGAGCATACA
      TGACAGAGTTTTCA
      TTAAAACGTTTGAA
      ATAAAACGCATACA
      ATAAAGCGATTTCT
      AGTAAGCGTATTCA
      TGTAAACCTTTTCA
      TGTAAGAGATATCT
      TGAAAACTTTTACA
      TGTAAACGATTCCA
      TGAAATCATTAGCA
      TGTAAGCGCAAGCA
      TGTGAACGCTTAAA
      TGTAATGGATTTCA
      TGAAAGTGATAACA
      TGCACACGTTATCT
      TGGTAGCGGTTATA
      TGTAAAAGCTTACA
      TGAAAACCTTTGCA
      TGAAAACGTTATAA
      AGAAACCGCTTTCT
      TGAAAACGTTTTTA
      ATAAACCGTTTTCA
      TGAAATCGCTATCA
      AGTAATCGTTATCT
      TGAAACAGTTATCA
      ATAAAGCGTTTACA
      TGAAAAAGGTAACA
      TGAAAGCGAATAAA
      AGTTAGCGCTTACA
      TATCAGCGTTAACA
      TGCCATCGTATTCA
      TGAAAACGCTTTTT
      AATAAGCGCTTACA
      TGAAAAAGGTAACA
      TGTAAGTATTTTCA
      AGAAAATGTTTTCA
      TGCAAGCGATTTGA
      TGATATCGCTTCCA
      GGTAATCGTTTACT
      TGAAAGCGCAAACA
      AAAAAGCGTATTCA
      TTAATACGATTACA
      TGAAAGCGTTAAGA
      TGTAAAGGCTTAAA
      TTAAAGCGGTTAAA
      TGAAAACTCTAACA
      TAAATACGCTTTCA
      TGAATACGAATACA
      TGAAATCGTTCACA
      TGTAAGCGTTGATA
      TTTAAGCGTTCACA
      TGATATCGATAACA
      TTTAAACGTTTACC
      AGAATGCGTTTACA
      TGTCAGCATTTTCA
      TGTAATCGGTTACA
      TGAAAGCACTGCCA
      TGAAAGTGCTTGCA
      TGATAACGCTGACA
      AGAAAGCGTTTTAT
      TGCGAACGCATTCA
      AGAAAGCGGACTCA
      TAGAAGCGATAACA
      GGCAAACGTTATCA
      TGTATGCGTTTTAA
      AGAAAGGGTTTTCT
      AGAAAGCGCTATAA

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      TGATATCGCTTGCA
      TGACAACGAAGGCT
      TGAAAAGGTTTACA
      AGTAACCGTTTACA
      AGAAATCGCTAACA
      TGTAAACTGTTACA
      TAATACCGGTTACT
      TGTATGCTCTTTCA
      TGAAAACTCTGTCA
      TTAAAACGTTTGAA
      ATAAAACGCATACA
      AGAAATCGCTTTAT
      AGTAAGCGTATTCA
      TGAAAAGGTTTACA
      AGATATCTCTTACA
      TGTAAAAGTTTTCA
      TGTAAACGATTCCA
      TGAAATCATTAGCA
      TGTAAGCGCAAGCA
      TTTAAGCGTTCACA
      TGTAATGGATTTCA
      TGTTATCACTTTCA
      AGATAACGTGTGCA
      TATAACCGCTACCA
      TGTAAGCTTTTACA
      TGAAAACCTTTGCA
      TTATAACGTTTTCA
      AGAAACCGCTTTCT
      TAAAAACGTTTTCA
      ATAAACCGTTTTCA
      TGATAGCGATTTCA
      AGATAACGATTACT
      TGATAACTGTTTCA
      ATAAAGCGTTTACA
      TGTTACCTTTTTCA
      TTTATTCGCTTTCA
      AGTTAGCGCTTACA
      TGTTAACGCTGATA
      TGAATACGATGGCA
      AAAAAGCGTTTTCA
      AATAAGCGCTTACA
      TGTTACCTTTTTCA
      TGTAAGTATTTTCA
      AGAAAATGTTTTCA
      TCAAATCGCTTGCA
      TGATATCGCTTCCA
      AGTAAACGATTACC
      TGTTTGCGCTTTCA
      AAAAAGCGTATTCA
      TGTAATCGTATTAA
      TCTTAACGCTTTCA
      TGTAAAGGCTTAAA
      TTTAACCGCTTTAA
      TGTTAGAGTTTTCA
      TAAATACGCTTTCA
      TGTATTCGTATTCA
      TGAAATCGTTCACA
      TATCAACGCTTACA
      TTTAAGCGTTCACA
      TGATATCGATAACA
      TTTAAACGTTTACC
      AGAATGCGTTTACA
      TGAAAATGCTGACA
      TGTAATCGGTTACA
      TGAAAGCACTGCCA
      TGAAAGTGCTTGCA
      TGATAACGCTGACA
      AGAAAGCGTTTTAT
      TGAATGCGTTCGCA
      AGAAAGCGGACTCA
      TGTTATCGCTTCTA
      TGATAACGTTTGCC
      TGTATGCGTTTTAA
      AGAAAGGGTTTTCT
      TTATAGCGCTTTCT
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.