PtxR - UniProtKB: P72131 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

CGGCCCGCCG
CGGCGCGCCG
GGGCGCCAGC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CGGCCCGCCGCC
CGGCGCGCCGTT
AGGGGCGCCAGC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 P72131 not specified CGGCCCGCCG +[2488878:2488887] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Isothermal titration calorimetry (ECO:0005647) PA2260 , PA2261 , PA2262 , PA2263 , ptxS (PA2259) , ptxR (PA2258)
    ... ... PA2260 PA2261 PA2262 PA2263 ptxS ptxR
    760 22844393
    NC_002516.2 P72131 not specified CGGCGCGCCG +[2493071:2493080] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Isothermal titration calorimetry (ECO:0005647) PA2264 , PA2265 , PA2266
    ... ... PA2264 PA2265 PA2266
    760 22844393
    NC_002516.2 P72131 not specified GGGCGCCAGC -[1242887:1242896] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Isothermal titration calorimetry (ECO:0005647) toxA (PA1148) , PA1149 , pys2 (PA1150) , imm2 (PA1151)
    ... ... toxA PA1149 pys2 imm2
    760 22844393

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CGGCCCGCCG
    CGGCGCGCCG
    GGGCGCCAGC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CGGCCCGCCGCC
    CGGCGCGCCGTT
    AGGGGCGCCAGC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.