Zur - UniProtKB: M9TRG5 regulon and binding site collection of Streptomyces coelicolor A3(2)


Sites are listed as curated.

TGGAATTCATTTTCA
TGACAACGGTTTCCA
TGAAAATGAGTGTCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGGAATTCATTTTCA
TGGAAACCGTTGTCA
TGACACTCATTTTCA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003888.3 M9TRG5 dimer TGGAATTCATTTTCA -[3791116:3791130] Experimental technique details DNAse footprinting (ECO:0005631) rpmG (SCO3428) , rpmE2 (SCO3427) , SCO3426 , rpmB (SCO3429) , rpsN (SCO3430) , SCO3431 , SCO3432
    ... ... rpmG rpmE2 SCO3426 rpmB rpsN SCO3431 SCO3432
    313 17416659
    NC_003888.3 M9TRG5 dimer TGACAACGGTTTCCA +[2703967:2703981] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) SCO2505 , SCO2504
    ... ... SCO2505 SCO2504
    312 17416659
    NC_003888.3 M9TRG5 dimer TGAAAATGAGTGTCA +[2703989:2704003] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) SCO2505 , SCO2504 , SCO2506 , SCO2507
    ... ... SCO2505 SCO2504 SCO2506 SCO2507
    312 17416659

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TGGAATTCATTTTCA
    TGACAACGGTTTCCA
    TGAAAATGAGTGTCA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGGAATTCATTTTCA
    TGGAAACCGTTGTCA
    TGACACTCATTTTCA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.