LexA - UniProtKB: C1F978 regulon and binding site collection of Acidobacterium capsulatum ATCC 51196


Sites are listed as curated.

GCGAACAAAAACCGAACAG
GCGAATATTAGGCGAAGAC
GTGAAGTGTATCGGATCAA
GAGAAGATAAGGCGAAGAC
GGGAAGAAAAGGCGAATCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GCGAACAAAAACCGAACAG
GCGAATATTAGGCGAAGAC
GTGAAGTGTATCGGATCAA
GAGAAGATAAGGCGAAGAC
GGGAAGAAAAGGCGAATCA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
GCGAACAAAAACCGAACAG Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) lexA (ACP_0231) , ACP_0232
... ... lexA ACP_0232
91 16549674
GCGAATATTAGGCGAAGAC Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) ACP_1517 , ACP_1518 , dnaE1 (ACP_1519) , ACP_1516
... ... ACP_1517 ACP_1518 dnaE1 ACP_1516
91 16549674
GTGAAGTGTATCGGATCAA Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) ACP_1517 , ACP_1518 , dnaE1 (ACP_1519) , ACP_1516
... ... ACP_1517 ACP_1518 dnaE1 ACP_1516
91 16549674
GAGAAGATAAGGCGAAGAC Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) ACP_3199 , ACP_3198 , dnaE2 (ACP_3197) , ACP_3200
... ... ACP_3199 ACP_3198 dnaE2 ACP_3200
91 16549674
GGGAAGAAAAGGCGAATCA Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) ACP_1812 , ACP_1813
... ... ACP_1812 ACP_1813
91 16549674

LexA - UniProtKB: C1F978 regulon and binding site collection of Rhodobacter sphaeroides 2.4.1


Sites are listed as curated.

GGGAACGCGGGCAGAACAG
CAGAACAGGCGGTGAACCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GGGAACGCGGGCAGAACAG
CAGAACAGGCGGTGAACCA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

Site sequence Experimental techniques Gene regulation Curations PMIDs
GGGAACGCGGGCAGAACAG Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) lexA (RSP_1997) , RSP_1998 , moaC (RSP_2000) , trpC (RSP_6214) , trpD (RSP_2001) , trpG (RSP_2002)
... ... lexA RSP_1998 moaC trpC trpD trpG
93 16549674
CAGAACAGGCGGTGAACCA Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) lexA (RSP_1997) , RSP_1998 , moaC (RSP_2000) , trpC (RSP_6214) , trpD (RSP_2001) , trpG (RSP_2002)
... ... lexA RSP_1998 moaC trpC trpD trpG
93 16549674

All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


Sites are listed as curated.

GCGAACAAAAACCGAACAG
GCGAATATTAGGCGAAGAC
GTGAAGTGTATCGGATCAA
GAGAAGATAAGGCGAAGAC
GGGAAGAAAAGGCGAATCA
GGGAACGCGGGCAGAACAG
CAGAACAGGCGGTGAACCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GCGAACAAAAACCGAACAG
GCGAATATTAGGCGAAGAC
GTGAAGTGTATCGGATCAA
GAGAAGATAAGGCGAAGAC
GGGAAGAAAAGGCGAATCA
GGGAACGCGGGCAGAACAG
CAGAACAGGCGGTGAACCA
Download data in FASTA format.
Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
Download raw data in TSV format. All reported sites are exported individually.
Download data in Attribute-Relation File Format (ARFF).
Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.