LexA - UniProtKB: I6Y1J7 regulon and binding site collection of Mycobacterium tuberculosis H37Rv


Sites are listed as curated.

TCGAACACATGTTCGATT
TCGAACACATGTTCGAGA
TCGAACAATTGTTCGATA
TCGAACACATGTTTGATT
TCGAATACATGTTCGAAT
TCGAAAATATATTCGATA
CCGAACACCTGTTCGATT
TCGATCACTTGTTCGAAT
TCGAAAATATGTTCGAAG
TCGCACACATGTTCGAGA
TCGAACGTATGTTCGAGA
TCGAACTCATATTCGAAT
TCGAACGAATGTGCGATA
CCGAACAATCGTTCGATA
TCGAACAACCGTTCTATA
TCGCTCAAATATTCGAAT
CCGAACATTTGATCGAAG
TCGAACACATGAGTGACT
TCGAACACGCGAGCGATT
GAGAACACCCGTTCGATA
ACGAAAGTCTGTTCGAAG
TCGCTAACATGTTCGAAT
TCGCTAACATGTTCGAAT
TCGAACAATTGTTCGATA
TCGAACGTATGTTCGAGA
TCGAACACATGTTCGAGA
TCGAACACATGTTCGA
TCGAACACATGTTCGA
TCGAACAATTGTTCGA
TCGAACGTATGTTCGA
TCGAAAGTATGTTCGA
TCGAAAGTATGTTCGA
TCGAACGAATGTGCGA
TCGAACATGTATTCGA
TCGCACACATGTTCGA
TAGAACGGTTGTTCGA
TCGAACAACCGTTCTA
TCGAACGATTGTTCGG
TCGAACACATGTTTGA
TCGAACAGGTGTTCGG
TCGAACATATTTTCGA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

ACTCGAACACATGTTCGATT
TCTCGAACACATGTTCGAGA
TATCGAACAATTGTTCGATA
TGTCGAACACATGTTTGATT
ACTCGAATACATGTTCGAAT
CATCGAAAATATATTCGATA
AGCCGAACACCTGTTCGATT
ATTCGATCACTTGTTCGAAT
CTTCGAACATATTTTCGAAC
TATCGCACACATGTTCGAGA
ACTCGAACGTATGTTCGAGA
GATCGAACTCATATTCGAAT
CATCGAACGAATGTGCGATA
TTCCGAACAATCGTTCGATA
ATTCGAACAACCGTTCTATA
CATCGCTCAAATATTCGAAT
CTTCGATCAAATGTTCGGAT
TATCGAACACATGAGTGACT
TGTCGAACACGCGAGCGATT
GAGAGAACACCCGTTCGATA
CTTCGAACAGACTTTCGTGC
ATTCGCTAACATGTTCGAAT
ATTCGCTAACATGTTCGAAT
TATCGAACAATTGTTCGATA
ACTCGAACGTATGTTCGAGA
TCTCGAACACATGTTCGAGA
ACTCGAACACATGTTCGATT
TCTCGAACACATGTTCGAGA
TATCGAACAATTGTTCGATA
TCTCGAACATACGTTCGAGT
GATCGAACATACTTTCGATA
GATCGAACATACTTTCGATA
TATCGCACATTCGTTCGATG
ACTCGAATACATGTTCGAAT
TATCGCACACATGTTCGAGA
ATTCGAACAACCGTTCTATA
ATTCGAACAACCGTTCTATA
TTCCGAACAATCGTTCGATA
TGTCGAACACATGTTTGATT
AGCCGAACACCTGTTCGATT
CTTCGAACATATTTTCGAAC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_018143.1 I6Y1J7 dimer TCGAACACATGTTCGATT -[1552513:1552530] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_1378c , RVBD_1377c , RVBD_1376 , RVBD_1375 , RVBD_1379 , RVBD_1380 , RVBD_1381 , RVBD_1382 , RVBD_1383 , RVBD_1384 , RVBD_1385
    ... ... RVBD_1378c RVBD_1377c RVBD_1376 RVBD_1375 RVBD_1379 RVBD_1380 RVBD_1381 RVBD_1382 RVBD_1383 RVBD_1384 RVBD_1385
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACACATGTTCGAGA +[3436767:3436784] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_3074 , RVBD_3073c , RVBD_3072c , RVBD_3075c
    ... ... RVBD_3074 RVBD_3073c RVBD_3072c RVBD_3075c
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACAATTGTTCGATA +[3784969:3784986] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_3370c , RVBD_3371 , RVBD_3372
    ... ... RVBD_3370c RVBD_3371 RVBD_3372
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACACATGTTTGATT +[3031749:3031766] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2719c , RVBD_2720 , RVBD_2721c , RVBD_2722 , RVBD_2723 , RVBD_2724c
    ... ... RVBD_2719c RVBD_2720 RVBD_2721c RVBD_2722 RVBD_2723 RVBD_2724c
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAATACATGTTCGAAT +[1928572:1928589] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_1702c , RVBD_1701 , RVBD_1700 , RVBD_1699 , RVBD_1702Ac
    ... ... RVBD_1702c RVBD_1701 RVBD_1700 RVBD_1699 RVBD_1702Ac
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAAAATATATTCGATA +[1178865:1178882] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_1057 , RVBD_1056
    ... ... RVBD_1057 RVBD_1056
    6 22528497
    NC_018143.1 I6Y1J7 dimer CCGAACACCTGTTCGATT +[3051541:3051558] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2737c , RVBD_2736c , RVBD_2735c , RVBD_2734 , RVBD_2737A , RVBD_2738c , RVBD_2739c , RVBD_2740
    ... ... RVBD_2737c RVBD_2736c RVBD_2735c RVBD_2734 RVBD_2737A RVBD_2738c RVBD_2739c RVBD_2740
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGATCACTTGTTCGAAT -[3640306:3640323] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_3260c , RVBD_3259 , RVBD_3261 , RVBD_3262 , RVBD_3262A
    ... ... RVBD_3260c RVBD_3259 RVBD_3261 RVBD_3262 RVBD_3262A
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAAAATATGTTCGAAG +[3811830:3811847] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_3395c , RVBD_3394c , RVBD_3395A
    ... ... RVBD_3395c RVBD_3394c RVBD_3395A
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGCACACATGTTCGAGA +[2358502:2358519] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2100 , RVBD_2099c , RVBD_2098c , RVBD_2101
    ... ... RVBD_2100 RVBD_2099c RVBD_2098c RVBD_2101
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACGTATGTTCGAGA +[4221258:4221275] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_3775 , RVBD_3774 , RVBD_3773c , RVBD_3772 , RVBD_6095 , RVBD_3777 , RVBD_3778c
    ... ... RVBD_3775 RVBD_3774 RVBD_3773c RVBD_3772 RVBD_6095 RVBD_3777 RVBD_3778c
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACTCATATTCGAAT -[79474:79491] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_0071 , RVBD_0070c , RVBD_0069c , RVBD_0068 , RVBD_0072 , RVBD_0073
    ... ... RVBD_0071 RVBD_0070c RVBD_0069c RVBD_0068 RVBD_0072 RVBD_0073
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACGAATGTGCGATA -[1117142:1117159] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_1000c , RVBD_0999 , RVBD_0998 , RVBD_0997 , RVBD_1001 , RVBD_1002c
    ... ... RVBD_1000c RVBD_0999 RVBD_0998 RVBD_0997 RVBD_1001 RVBD_1002c
    6 22528497
    NC_018143.1 I6Y1J7 dimer CCGAACAATCGTTCGATA +[2925414:2925431] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2594c , RVBD_2593c , RVBD_2592c , RVBD_2591 , RVBD_2595 , RVBD_2596
    ... ... RVBD_2594c RVBD_2593c RVBD_2592c RVBD_2591 RVBD_2595 RVBD_2596
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACAACCGTTCTATA +[2903549:2903566] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2578c , RVBD_2579 , RVBD_2577
    ... ... RVBD_2578c RVBD_2579 RVBD_2577
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGCTCAAATATTCGAAT -[2833845:2833862] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2517c , RVBD_2516c , RVBD_2518c
    ... ... RVBD_2517c RVBD_2516c RVBD_2518c
    6 22528497
    NC_018143.1 I6Y1J7 dimer CCGAACATTTGATCGAAG +[3031616:3031633] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2719c , RVBD_2720 , RVBD_2721c , RVBD_2722 , RVBD_2723 , RVBD_2724c
    ... ... RVBD_2719c RVBD_2720 RVBD_2721c RVBD_2722 RVBD_2723 RVBD_2724c
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACACATGAGTGACT -[3031595:3031612] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2719c , RVBD_2720 , RVBD_2721c , RVBD_2722 , RVBD_2723 , RVBD_2724c
    ... ... RVBD_2719c RVBD_2720 RVBD_2721c RVBD_2722 RVBD_2723 RVBD_2724c
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACACGCGAGCGATT -[3031571:3031588] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2719c , RVBD_2720 , RVBD_2721c , RVBD_2722 , RVBD_2723 , RVBD_2724c
    ... ... RVBD_2719c RVBD_2720 RVBD_2721c RVBD_2722 RVBD_2723 RVBD_2724c
    6 22528497
    NC_018143.1 I6Y1J7 dimer GAGAACACCCGTTCGATA +[2925178:2925195] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_2594c , RVBD_2593c , RVBD_2592c , RVBD_2591 , RVBD_2595 , RVBD_2596
    ... ... RVBD_2594c RVBD_2593c RVBD_2592c RVBD_2591 RVBD_2595 RVBD_2596
    6 22528497
    NC_018143.1 I6Y1J7 dimer ACGAAAGTCTGTTCGAAG +[1547174:1547191] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_1374c , RVBD_1373 , RVBD_1372 , RVBD_1371 , RVBD_1375 , RVBD_1376 , RVBD_1377c , RVBD_1378c , RVBD_1379 , RVBD_1380 , RVBD_1381 , RVBD_1382 , RVBD_1383 , RVBD_1384 , RVBD_1385
    ... ... RVBD_1374c RVBD_1373 RVBD_1372 RVBD_1371 RVBD_1375 RVBD_1376 RVBD_1377c RVBD_1378c RVBD_1379 RVBD_1380 RVBD_1381 RVBD_1382 RVBD_1383 RVBD_1384 RVBD_1385
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGCTAACATGTTCGAAT +[105088:105105] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_0095c , RVBD_0094c , RVBD_0093c , RVBD_0092 , RVBD_0096 , RVBD_0097 , RVBD_0098 , RVBD_0099 , RVBD_0100 , RVBD_0101
    ... ... RVBD_0095c RVBD_0094c RVBD_0093c RVBD_0092 RVBD_0096 RVBD_0097 RVBD_0098 RVBD_0099 RVBD_0100 RVBD_0101
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGCTAACATGTTCGAAT +[1789833:1789850] Experimental technique details Beta-gal reporter assay - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) RVBD_1588c , RVBD_1587c , RVBD_1586c , RVBD_1585c , RVBD_1589 , RVBD_1590 , RVBD_1591
    ... ... RVBD_1588c RVBD_1587c RVBD_1586c RVBD_1585c RVBD_1589 RVBD_1590 RVBD_1591
    6 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACAATTGTTCGATA +[3784969:3784986] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) RVBD_3370c , RVBD_3371 , RVBD_3372
    ... ... RVBD_3370c RVBD_3371 RVBD_3372
    135 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACGTATGTTCGAGA +[4221258:4221275] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) RVBD_3778c , RVBD_3777 , RVBD_6095 , RVBD_3772 , RVBD_3773c , RVBD_3774 , RVBD_3775
    ... ... RVBD_3778c RVBD_3777 RVBD_6095 RVBD_3772 RVBD_3773c RVBD_3774 RVBD_3775
    135 22528497
    NC_018143.1 I6Y1J7 dimer TCGAACACATGTTCGAGA +[3436767:3436784] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) RVBD_3074 , RVBD_3075c , RVBD_3072c , RVBD_3073c
    ... ... RVBD_3074 RVBD_3075c RVBD_3072c RVBD_3073c
    135 22528497
    NC_000962.3 I6Y1J7 dimer TCGAACACATGTTCGA -[1552509:1552524] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv1378c , Rv1377c , Rv1376 , Rv1375 , pyrR (Rv1379) , pyrB (Rv1380) , pyrC (Rv1381) , Rv1382 , carA (Rv1383) , carB (Rv1384) , pyrF (Rv1385)
    ... ... Rv1378c Rv1377c Rv1376 Rv1375 pyrR pyrB pyrC Rv1382 carA carB pyrF
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACACATGTTCGA +[3436770:3436785] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv3074 , Rv3073c , Rv3072c , Rv3075c
    ... ... Rv3074 Rv3073c Rv3072c Rv3075c
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACAATTGTTCGA -[3784789:3784804] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) dnaE2 (Rv3370c) , Rv3371 , otsB2 (Rv3372)
    ... ... dnaE2 Rv3371 otsB2
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACGTATGTTCGA +[4221080:4221095] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv3776 , lipE (Rv3775) , echA21 (Rv3774) , Rv3773c , hisC2 (Rv3772) , serU (Rvnt45) , Rv3777 , Rv3778c
    ... ... Rv3776 lipE echA21 Rv3773c hisC2 serU Rv3777 Rv3778c
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAAAGTATGTTCGA +[400159:400174] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv0336 , PE6 (Rv0335c) , rmlA (Rv0334) , Rv0333 , Rv0332
    ... ... Rv0336 PE6 rmlA Rv0333 Rv0332
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAAAGTATGTTCGA +[606518:606533] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv0515 , Rv0514 , Rv0513 , hemB (Rv0512) , Rv0516c
    ... ... Rv0515 Rv0514 Rv0513 hemB Rv0516c
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACGAATGTGCGA -[1117140:1117155] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv1000c , Rv0999 , Rv0998 , Rv0997 , arcA (Rv1001) , Rv1002c
    ... ... Rv1000c Rv0999 Rv0998 Rv0997 arcA Rv1002c
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACATGTATTCGA -[1928565:1928580] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv1702c , Rv1701 , Rv1700 , pyrG (Rv1699) , Rv1703c
    ... ... Rv1702c Rv1701 Rv1700 pyrG Rv1703c
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGCACACATGTTCGA +[2358494:2358509] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv2100 , PE21 (Rv2099c) , PE_PGRS36 (Rv2098c) , helZ (Rv2101)
    ... ... Rv2100 PE21 PE_PGRS36 helZ
    174 12029045
    NC_000962.3 I6Y1J7 dimer TAGAACGGTTGTTCGA -[2903539:2903554] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv2578c , Rv2577 , dhaA (Rv2579)
    ... ... Rv2578c Rv2577 dhaA
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACAACCGTTCTA +[2903539:2903554] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) dhaA (Rv2579) , Rv2578c , Rv2577
    ... ... dhaA Rv2578c Rv2577
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACGATTGTTCGG -[2925404:2925419] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) ruvC (Rv2594c) , ruvA (Rv2593c) , ruvB (Rv2592c) , PE_PGRS44 (Rv2591) , vapB40 (Rv2595) , vapC40 (Rv2596)
    ... ... ruvC ruvA ruvB PE_PGRS44 vapB40 vapC40
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACACATGTTTGA +[3031739:3031754] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) lexA (Rv2720) , Rv2719c , Rv2721c , Rv2722 , Rv2723 , fadE20 (Rv2724c)
    ... ... lexA Rv2719c Rv2721c Rv2722 Rv2723 fadE20
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACAGGTGTTCGG -[3051531:3051546] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) recA (Rv2737c) , recX (Rv2736c) , Rv2735c , Rv2734 , Rv2737A , Rv2738c , Rv2739c , ephG (Rv2740)
    ... ... recA recX Rv2735c Rv2734 Rv2737A Rv2738c Rv2739c ephG
    174 12029045
    NC_000962.3 I6Y1J7 dimer TCGAACATATTTTCGA -[3811650:3811665] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) Rv3395c , Rv3394c , Rv3395A
    ... ... Rv3395c Rv3394c Rv3395A
    174 12029045

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TCGAACACATGTTCGATT
    TCGAACACATGTTCGAGA
    TCGAACAATTGTTCGATA
    TCGAACACATGTTTGATT
    TCGAATACATGTTCGAAT
    TCGAAAATATATTCGATA
    CCGAACACCTGTTCGATT
    TCGATCACTTGTTCGAAT
    TCGAAAATATGTTCGAAG
    TCGCACACATGTTCGAGA
    TCGAACGTATGTTCGAGA
    TCGAACTCATATTCGAAT
    TCGAACGAATGTGCGATA
    CCGAACAATCGTTCGATA
    TCGAACAACCGTTCTATA
    TCGCTCAAATATTCGAAT
    CCGAACATTTGATCGAAG
    TCGAACACATGAGTGACT
    TCGAACACGCGAGCGATT
    GAGAACACCCGTTCGATA
    ACGAAAGTCTGTTCGAAG
    TCGCTAACATGTTCGAAT
    TCGCTAACATGTTCGAAT
    TCGAACAATTGTTCGATA
    TCGAACGTATGTTCGAGA
    TCGAACACATGTTCGAGA
    TCGAACACATGTTCGA
    TCGAACACATGTTCGA
    TCGAACAATTGTTCGA
    TCGAACGTATGTTCGA
    TCGAAAGTATGTTCGA
    TCGAAAGTATGTTCGA
    TCGAACGAATGTGCGA
    TCGAACATGTATTCGA
    TCGCACACATGTTCGA
    TAGAACGGTTGTTCGA
    TCGAACAACCGTTCTA
    TCGAACGATTGTTCGG
    TCGAACACATGTTTGA
    TCGAACAGGTGTTCGG
    TCGAACATATTTTCGA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ACTCGAACACATGTTCGATT
    TCTCGAACACATGTTCGAGA
    TATCGAACAATTGTTCGATA
    TGTCGAACACATGTTTGATT
    ACTCGAATACATGTTCGAAT
    CATCGAAAATATATTCGATA
    AGCCGAACACCTGTTCGATT
    ATTCGATCACTTGTTCGAAT
    CTTCGAACATATTTTCGAAC
    TATCGCACACATGTTCGAGA
    ACTCGAACGTATGTTCGAGA
    GATCGAACTCATATTCGAAT
    CATCGAACGAATGTGCGATA
    TTCCGAACAATCGTTCGATA
    ATTCGAACAACCGTTCTATA
    CATCGCTCAAATATTCGAAT
    CTTCGATCAAATGTTCGGAT
    TATCGAACACATGAGTGACT
    TGTCGAACACGCGAGCGATT
    GAGAGAACACCCGTTCGATA
    CTTCGAACAGACTTTCGTGC
    ATTCGCTAACATGTTCGAAT
    ATTCGCTAACATGTTCGAAT
    TATCGAACAATTGTTCGATA
    ACTCGAACGTATGTTCGAGA
    TCTCGAACACATGTTCGAGA
    ACTCGAACACATGTTCGATT
    TCTCGAACACATGTTCGAGA
    TATCGAACAATTGTTCGATA
    TCTCGAACATACGTTCGAGT
    GATCGAACATACTTTCGATA
    GATCGAACATACTTTCGATA
    TATCGCACATTCGTTCGATG
    ACTCGAATACATGTTCGAAT
    TATCGCACACATGTTCGAGA
    ATTCGAACAACCGTTCTATA
    ATTCGAACAACCGTTCTATA
    TTCCGAACAATCGTTCGATA
    TGTCGAACACATGTTTGATT
    AGCCGAACACCTGTTCGATT
    CTTCGAACATATTTTCGAAC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.