LacR - UniProtKB: T1ZD52 regulon and binding site collection of Streptococcus intermedius JTH08


Sites are listed as curated.

TGTTTGACTTTGTTTTGTTT
TGCTTTATTTTGTTGTTTTT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGTTTGACTTTGTTTTGTTT
TGCTTTATTTTGTTGTTTTT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_018073.1 T1ZD52 not specified TGTTTGACTTTGTTTTGTTT +[1323781:1323800] Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Visual sequence inspection (nan) lacR (SCIM_1151) , lacD (SCIM_1152)
    ... ... lacR lacD
    930 23798532
    NC_018073.1 T1ZD52 not specified TGCTTTATTTTGTTGTTTTT +[1321750:1321769] Experimental technique details DNA affinity purification (ECO:0005629) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Visual sequence inspection (nan) SCIM_1148 , SCIM_1147 , SCIM_1146 , lacC (SCIM_1145) , SCIM_1144 , SCIM_1149 , lacB (SCIM_1150)
    ... ... SCIM_1148 SCIM_1147 SCIM_1146 lacC SCIM_1144 SCIM_1149 lacB
    930 23798532

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TGTTTGACTTTGTTTTGTTT
    TGCTTTATTTTGTTGTTTTT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGTTTGACTTTGTTTTGTTT
    TGCTTTATTTTGTTGTTTTT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.