CcpA - UniProtKB: G5L2G2 regulon and binding site collection of Streptococcus suis P1/7


Sites are listed as curated.

AAGGAAACGCTTTCAT
ATGTGAGCGTTTTCAA
TTGAAAACACTTTCTA
GTTTTTCATTTATTTTCAAGT
ATGGAAGCGTTTTCTT
ATGGAAGCGTTTTCAA
ATGTAAACATTTTCAA
ATTGAACCGTTTTCTT
GGTTTTCACAAAAATTTCTGT
CTTTTTCTATCCTTTTTTCAC
CTTTTTCAAATCCTTTCCCTT
TTATTTCAAAGATTTTCCAAT
TTGAAAACTTTTTCTA
GTTTTTCTGAAATTTTCATAC
ATTTTTCAGAAAATTTCCATT
AATTTTCAGAAAATTTCTTGA
TTTTTTCATAAATTTTCAGTT
CTTTTTCTTTAATTTTATCTA
CTTTTTCATAAATTTTGCCTT
TCTTTTCATAAAAATTCCAAT
TGTTTTCCGAAATATTTTCAT
GATTTTCAGTACATTTTTCAC
GAGTAAACGTTTTCTT
TTGTAATCGTTTTCTT
TATTAAACGCTTTCAT
AAGGAAACGCTTTCAT
TATTTTCATTTTTCTTTTCAA
CTCTTTCAAGCTATTTTCAAC
GAGATAGCGCTTACAT
TTGTAAACGTTTTCTT
TTTTTTCTTGAAAAATCCCTT
TATTCTCAAGCATTTTTTCAA
TTGTAAGCCTTTTCTT
TTTTTTCAAGAAATTTATCAA
AAGAAAACGTTTGCAA
ATAAAAACGCTTGCAA
ATTAAAACGCTTTCTT
ATGAAAACCCTTTCTT
TTGCAACCGTTTTCTT
TTGCAAGCATTTTCTA
TTGTTTCATGACATTTTTGGC
CATTTTCATAACCTTTCTGTA
GCGTAACCGTTTTCTT
GCTTTTCCGTAATATTTTAAA
TCGAAAACGATTTCAA
GCTTTTCAATTTGTTTTCAGT
CAGAAAACGGTTACAA
TTGAAACCACTTTCAA
TCTTTTCTGAAAATATTTTGT
GTGCAAACGTTTTCTT
AAGATAACGTTTTCCA
TTTTTTCCAAATTTTTCTCAC
TATTTTCAAGTTCATTTTCAT
CTTTTTCATAACTTTTCCTCC
CATTTTCTTTCCAATTTTCAA
CCTTTTCTGACATTTTTCTCT
ATAGAAGCGTTTTCAT
ACTTTTCTTTCAATTTTCCAA
TTTTTTCATTTCATTTTTTCC
CTTTTTCAATAAGTTTTCATC
AAGGAAAATCTTACAC
GATTTTCCTTCATTCTTTCAT
TTTTTTCAATAATTTTACTGT
CCCTTTCTTTCATTTTTTCAA
GAGAGAACGGTTTCTA
TTTTTTCAATGATTTTCTGAT
GATTTTCTGGATATTTTCACC
ATGATAACGCTTTCTT
CATTTTCCTAACCATTTTCAC
ATTTTTCAAGCCTATTTCAGT
GATTTTCAGAAAGATGTTCAA
TCTTTTCATGCACCTTTTCAT
TCTTTTCAAAATTATTTCTCT
GTTTTTCCTGAAAATTCCGTA
GTTTTTCCAACAATTTCCGGA
TTTTTTCAAGAAAATTTACAA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TTAAGGAAACGCTTTCATTTTTT
ACTTGAAAACGCTCACATTTATT
TGTAGAAAGTGTTTTCAAATGGT
TACTTGAAAATAAATGAAAAACC
TCAAGAAAACGCTTCCATGTAAA
AAATGGAAGCGTTTTCAAAAAAA
CTTTGAAAATGTTTACATGCTAG
AAAAGAAAACGGTTCAATTACTT
TACAGAAATTTTTGTGAAAACCT
AGTGAAAAAAGGATAGAAAAAGA
CAAGGGAAAGGATTTGAAAAAGT
GATTGGAAAATCTTTGAAATAAC
GTTAGAAAAAGTTTTCAATATTG
GTATGAAAATTTCAGAAAAACAT
AAATGGAAATTTTCTGAAAAATC
GTCAAGAAATTTTCTGAAAATTC
AACTGAAAATTTATGAAAAAAAT
TAGATAAAATTAAAGAAAAAGGA
CAAGGCAAAATTTATGAAAAAGA
GATTGGAATTTTTATGAAAAGAC
CAATGAAAATATTTCGGAAAACA
GGTGAAAAATGTACTGAAAATCA
AAAAGAAAACGTTTACTCGAAAA
AAAAGAAAACGATTACAAAATCT
TAATGAAAGCGTTTAATAGAAAA
TTAAGGAAACGCTTTCATTTTTT
GTTGAAAAGAAAAATGAAAATAA
AGTTGAAAATAGCTTGAAAGAGA
TAGAGATAGCGCTTACATTGTTT
TTAAGAAAACGTTTACAAAGGTA
AGAAGGGATTTTTCAAGAAAAAA
TTGAAAAAATGCTTGAGAATATG
AAAAGAAAAGGCTTACAAAGGAG
TTGATAAATTTCTTGAAAAAAAT
TTAAGAAAACGTTTGCAAAGACT
TTATAAAAACGCTTGCAAACGGA
TGAAGAAAGCGTTTTAATTGTCC
TGAAGAAAGGGTTTTCATTGAGT
ATAAGAAAACGGTTGCAATATCC
GATAGAAAATGCTTGCAATTCTG
TGCCAAAAATGTCATGAAACAAA
GTACAGAAAGGTTATGAAAATGA
AAAAGAAAACGGTTACGCATTTT
GTTTAAAATATTACGGAAAAGCT
TATTGAAATCGTTTTCGAATTTG
TACTGAAAACAAATTGAAAAGCA
GACAGAAAACGGTTACAATTGTA
TCTTGAAAGTGGTTTCAAAAAGT
TAACAAAATATTTTCAGAAAAGA
TAAAGAAAACGTTTGCACAATTT
AAAAGATAACGTTTTCCAGCGCT
GTGAGAAAAATTTGGAAAAAACA
CGATGAAAATGAACTTGAAAATA
AGGAGGAAAAGTTATGAAAAAGA
TTTTGAAAATTGGAAAGAAAATG
AAGAGAAAAATGTCAGAAAAGGT
TGATAGAAGCGTTTTCATTTTTG
GTTGGAAAATTGAAAGAAAAGTA
AGGAAAAAATGAAATGAAAAAAA
TGATGAAAACTTATTGAAAAAGT
TGAAGGAAAATCTTACACAAGTT
CTATGAAAGAATGAAGGAAAATC
TACAGTAAAATTATTGAAAAAAT
AATTGAAAAAATGAAAGAAAGGG
AAGAGAGAACGGTTTCTAATCTT
ATCAGAAAATCATTGAAAAAAGA
TGGTGAAAATATCCAGAAAATCC
AAAAGAAAGCGTTATCATTGTTG
TAGTGAAAATGGTTAGGAAAATG
TACTGAAATAGGCTTGAAAAATT
ATTGAACATCTTTCTGAAAATCG
CAATGAAAAGGTGCATGAAAAGA
AAGAGAAATAATTTTGAAAAGAT
CTACGGAATTTTCAGGAAAAACG
TTCCGGAAATTGTTGGAAAAACA
TTTGTAAATTTTCTTGAAAAAAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_012925.1 G5L2G2 not specified AAGGAAACGCTTTCAT +[896121:896136] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details GFP Promoter Fusion (ECO:0005636) - Experimental technique details Site directed mutagenesis (ECO:0005667) glgC (SSU0871) , glgC (SSU0870) , glgA (SSU0873) , glgB (SSU0874)
    ... ... glgC glgC glgA glgB
    852 24673665
    NC_012925.1 G5L2G2 not specified ATGTGAGCGTTTTCAA +[603639:603654] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details GFP Promoter Fusion (ECO:0005636) - Experimental technique details Site directed mutagenesis (ECO:0005667) arcA (SSU0580) , SSU0581 , arcB (SSU0582) , arcC (SSU0583)
    ... ... arcA SSU0581 arcB arcC
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGAAAACACTTTCTA +[191253:191268] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pfl (SSU0191) , dinB (SSU0192) , SSU0193
    ... ... pfl dinB SSU0193
    852 24673665
    NC_012925.1 G5L2G2 not specified GTTTTTCATTTATTTTCAAGT -[191281:191301] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pfl (SSU0191) , dinB (SSU0192) , SSU0193
    ... ... pfl dinB SSU0193
    852 24673665
    NC_012925.1 G5L2G2 not specified ATGGAAGCGTTTTCTT +[266749:266764] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) adhE (SSU0261) , adhP (SSU0260)
    ... ... adhE adhP
    852 24673665
    NC_012925.1 G5L2G2 not specified ATGGAAGCGTTTTCAA +[700750:700765] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) glpK (SSU0675) , glpO (SSU0676) , glpF1 (SSU0677) , SSU0678 , SSU0679
    ... ... glpK glpO glpF1 SSU0678 SSU0679
    852 24673665
    NC_012925.1 G5L2G2 not specified ATGTAAACATTTTCAA +[956053:956068] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) ldh (SSU0927) , gyrA (SSU0926) , srtA (SSU0925) , radC (SSU0924)
    ... ... ldh gyrA srtA radC
    852 24673665
    NC_012925.1 G5L2G2 not specified ATTGAACCGTTTTCTT +[1653437:1653452] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pdhA (SSU1637) , SSU1638
    ... ... pdhA SSU1638
    852 24673665
    NC_012925.1 G5L2G2 not specified GGTTTTCACAAAAATTTCTGT -[1653456:1653476] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pdhA (SSU1637) , SSU1638
    ... ... pdhA SSU1638
    852 24673665
    NC_012925.1 G5L2G2 not specified CTTTTTCTATCCTTTTTTCAC -[10022:10042] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0009 , SSU0010 , SSU0011 , SSU0012 , SSU0013 , hpt (SSU0014) , ftsH (SSU0015)
    ... ... SSU0009 SSU0010 SSU0011 SSU0012 SSU0013 hpt ftsH
    852 24673665
    NC_012925.1 G5L2G2 not specified CTTTTTCAAATCCTTTCCCTT -[235615:235635] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0229 , SSU0230 , SSU0231 , SSU0232 , SSU0233
    ... ... SSU0229 SSU0230 SSU0231 SSU0232 SSU0233
    852 24673665
    NC_012925.1 G5L2G2 not specified TTATTTCAAAGATTTTCCAAT +[1216088:1216108] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1194 , SSU1195
    ... ... SSU1194 SSU1195
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGAAAACTTTTTCTA -[1618053:1618068] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1611 , SSU1610
    ... ... SSU1611 SSU1610
    852 24673665
    NC_012925.1 G5L2G2 not specified GTTTTTCTGAAATTTTCATAC +[1617875:1617895] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1611 , SSU1610
    ... ... SSU1611 SSU1610
    852 24673665
    NC_012925.1 G5L2G2 not specified ATTTTTCAGAAAATTTCCATT -[1759738:1759758] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) leuA (SSU1741) , leuB (SSU1740) , leuC (SSU1739) , leuD (SSU1738) , SSU1737
    ... ... leuA leuB leuC leuD SSU1737
    852 24673665
    NC_012925.1 G5L2G2 not specified AATTTTCAGAAAATTTCTTGA -[1698199:1698219] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) alsS (SSU1682) , ilvH (SSU1681) , ilvC (SSU1680) , SSU1683 , SSU1684 , SSU1685
    ... ... alsS ilvH ilvC SSU1683 SSU1684 SSU1685
    852 24673665
    NC_012925.1 G5L2G2 not specified TTTTTTCATAAATTTTCAGTT +[335429:335449] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) asnB (SSU0315) , SSU0316
    ... ... asnB SSU0316
    852 24673665
    NC_012925.1 G5L2G2 not specified CTTTTTCTTTAATTTTATCTA +[902634:902654] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0875
    ... ... SSU0875
    852 24673665
    NC_012925.1 G5L2G2 not specified CTTTTTCATAAATTTTGCCTT -[708517:708537] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0680 , SSU0681
    ... ... SSU0680 SSU0681
    852 24673665
    NC_012925.1 G5L2G2 not specified TCTTTTCATAAAAATTCCAAT +[766169:766189] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pyrR (SSU0735) , SSU0734 , pyrB (SSU0736)
    ... ... pyrR SSU0734 pyrB
    852 24673665
    NC_012925.1 G5L2G2 not specified TGTTTTCCGAAATATTTTCAT +[963899:963919] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) deoA (SSU0937) , deoC (SSU0936) , cdd (SSU0935) , SSU0934
    ... ... deoA deoC cdd SSU0934
    852 24673665
    NC_012925.1 G5L2G2 not specified GATTTTCAGTACATTTTTCAC +[1779302:1779322] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) purA (SSU1758) , SSU1757 , uppS (SSU1756) , SSU1755 , eep (SSU1754) , gshA (SSU1759)
    ... ... purA SSU1757 uppS SSU1755 eep gshA
    852 24673665
    NC_012925.1 G5L2G2 not specified GAGTAAACGTTTTCTT +[254689:254704] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) gla (SSU0249) , SSU0248 , SSU0250 , SSU0251 , SSU0252
    ... ... gla SSU0248 SSU0250 SSU0251 SSU0252
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGTAATCGTTTTCTT -[347938:347953] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) galK (SSU0329) , galR (SSU0328) , galT (SSU0330) , SSU0331 , SSU0332
    ... ... galK galR galT SSU0331 SSU0332
    852 24673665
    NC_012925.1 G5L2G2 not specified TATTAAACGCTTTCAT +[667653:667668] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pgmA (SSU0644)
    ... ... pgmA
    852 24673665
    NC_012925.1 G5L2G2 not specified AAGGAAACGCTTTCAT +[896121:896136] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) glgC (SSU0870) , glgC (SSU0871) , glgA (SSU0873) , glgB (SSU0874)
    ... ... glgC glgC glgA glgB
    852 24673665
    NC_012925.1 G5L2G2 not specified TATTTTCATTTTTCTTTTCAA -[896086:896106] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) glgC (SSU0870) , glgC (SSU0871) , glgA (SSU0873) , glgB (SSU0874)
    ... ... glgC glgC glgA glgB
    852 24673665
    NC_012925.1 G5L2G2 not specified CTCTTTCAAGCTATTTTCAAC +[926702:926722] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) lacE (SSU0892) , lacG (SSU0891) , lacX (SSU0890)
    ... ... lacE lacG lacX
    852 24673665
    NC_012925.1 G5L2G2 not specified GAGATAGCGCTTACAT +[1259791:1259806] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1230 , SSU1229
    ... ... SSU1230 SSU1229
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGTAAACGTTTTCTT +[1296237:1296252] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) glgP (SSU1265)
    ... ... glgP
    852 24673665
    NC_012925.1 G5L2G2 not specified TTTTTTCTTGAAAAATCCCTT -[1352523:1352543] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) eno (SSU1320) , SSU1321
    ... ... eno SSU1321
    852 24673665
    NC_012925.1 G5L2G2 not specified TATTCTCAAGCATTTTTTCAA -[1392935:1392955] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) upp (SSU1367) , clpP (SSU1366) , SSU1365 , SSU1364
    ... ... upp clpP SSU1365 SSU1364
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGTAAGCCTTTTCTT +[1396118:1396133] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) gtfA (SSU1369) , dexB (SSU1368) , upp (SSU1367) , clpP (SSU1366) , SSU1365 , SSU1364
    ... ... gtfA dexB upp clpP SSU1365 SSU1364
    852 24673665
    NC_012925.1 G5L2G2 not specified TTTTTTCAAGAAATTTATCAA +[1861535:1861555] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pgi (SSU1836) , SSU1835 , SSU1834
    ... ... pgi SSU1835 SSU1834
    852 24673665
    NC_012925.1 G5L2G2 not specified AAGAAAACGTTTGCAA -[1880371:1880386] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1849
    ... ... SSU1849
    852 24673665
    NC_012925.1 G5L2G2 not specified ATAAAAACGCTTGCAA +[1947596:1947611] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) malX (SSU1915) , malQ (SSU1914) , malX (SSU1915g)
    ... ... malX malQ malX
    852 24673665
    NC_012925.1 G5L2G2 not specified ATTAAAACGCTTTCTT +[1963635:1963650] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1927 , SSU1926 , SSU1925 , SSU1924 , aspS (SSU1923) , SSU1922 , nrdI (SSU1921)
    ... ... SSU1927 SSU1926 SSU1925 SSU1924 aspS SSU1922 nrdI
    852 24673665
    NC_012925.1 G5L2G2 not specified ATGAAAACCCTTTCTT +[1967450:1967465] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1929 , SSU1928 , SSU1930 , SSU1931
    ... ... SSU1929 SSU1928 SSU1930 SSU1931
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGCAACCGTTTTCTT -[420137:420152] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0395 , comFC (SSU0394)
    ... ... SSU0395 comFC
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGCAAGCATTTTCTA -[513860:513875] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) tufA (SSU0482)
    ... ... tufA
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGTTTCATGACATTTTTGGC +[1198937:1198957] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) prfC (SSU1179) , SSU1180
    ... ... prfC SSU1180
    852 24673665
    NC_012925.1 G5L2G2 not specified CATTTTCATAACCTTTCTGTA -[230384:230404] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0226 , SSU0227 , SSU0228 , SSU0229
    ... ... SSU0226 SSU0227 SSU0228 SSU0229
    852 24673665
    NC_012925.1 G5L2G2 not specified GCGTAACCGTTTTCTT -[380177:380192] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0355 , SSU0356 , SSU0357
    ... ... SSU0355 SSU0356 SSU0357
    852 24673665
    NC_012925.1 G5L2G2 not specified GCTTTTCCGTAATATTTTAAA -[380115:380135] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0355 , SSU0356 , SSU0357
    ... ... SSU0355 SSU0356 SSU0357
    852 24673665
    NC_012925.1 G5L2G2 not specified TCGAAAACGATTTCAA -[639100:639115] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0613 , SSU0614 , SSU0615
    ... ... SSU0613 SSU0614 SSU0615
    852 24673665
    NC_012925.1 G5L2G2 not specified GCTTTTCAATTTGTTTTCAGT -[937951:937971] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0908
    ... ... SSU0908
    852 24673665
    NC_012925.1 G5L2G2 not specified CAGAAAACGGTTACAA -[1193425:1193440] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1172 , SSU1171 , SSU1170 , SSU1169 , SSU1168 , SSU1167
    ... ... SSU1172 SSU1171 SSU1170 SSU1169 SSU1168 SSU1167
    852 24673665
    NC_012925.1 G5L2G2 not specified TTGAAACCACTTTCAA +[1226296:1226311] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) ccpA (SSU1202) , pepQ (SSU1203)
    ... ... ccpA pepQ
    852 24673665
    NC_012925.1 G5L2G2 not specified TCTTTTCTGAAAATATTTTGT +[1852761:1852781] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1826 , SSU1825 , SSU1824 , dut (SSU1823) , SSU1822 , sms (SSU1821) , SSU1820 , gpsA (SSU1827) , hasC (SSU1828)
    ... ... SSU1826 SSU1825 SSU1824 dut SSU1822 sms SSU1820 gpsA hasC
    852 24673665
    NC_012925.1 G5L2G2 not specified GTGCAAACGTTTTCTT +[1881491:1881506] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1850
    ... ... SSU1850
    852 24673665
    NC_012925.1 G5L2G2 not specified AAGATAACGTTTTCCA +[552747:552762] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) wzg (SSU0515)
    ... ... wzg
    852 24673665
    NC_012925.1 G5L2G2 not specified TTTTTTCCAAATTTTTCTCAC +[1679070:1679090] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1665 , oppA (SSU1664)
    ... ... SSU1665 oppA
    852 24673665
    NC_012925.1 G5L2G2 not specified TATTTTCAAGTTCATTTTCAT +[1921784:1921804] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1889 , SSU1888 , SSU1887 , SSU1886 , SSU1885
    ... ... SSU1889 SSU1888 SSU1887 SSU1886 SSU1885
    852 24673665
    NC_012925.1 G5L2G2 not specified CTTTTTCATAACTTTTCCTCC -[789628:789648] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) prtS (SSU0757) , SSU0756
    ... ... prtS SSU0756
    852 24673665
    NC_012925.1 G5L2G2 not specified CATTTTCTTTCCAATTTTCAA +[837244:837264] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0806 , SSU0805 , SSU0804
    ... ... SSU0806 SSU0805 SSU0804
    852 24673665
    NC_012925.1 G5L2G2 not specified CCTTTTCTGACATTTTTCTCT +[837838:837858] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0806 , SSU0805 , SSU0804
    ... ... SSU0806 SSU0805 SSU0804
    852 24673665
    NC_012925.1 G5L2G2 not specified ATAGAAGCGTTTTCAT -[1497103:1497118] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pflC (SSU1480)
    ... ... pflC
    852 24673665
    NC_012925.1 G5L2G2 not specified ACTTTTCTTTCAATTTTCCAA +[2005051:2005071] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) htrA (SSU1968) , SSU1967 , SSU1966 , SSU1969
    ... ... htrA SSU1967 SSU1966 SSU1969
    852 24673665
    NC_012925.1 G5L2G2 not specified TTTTTTCATTTCATTTTTTCC +[978946:978966] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) pstS (SSU0953) , pstC (SSU0952) , SSU0951 , pstB2 (SSU0950) , pstB1 (SSU0949) , phoU (SSU0948)
    ... ... pstS pstC SSU0951 pstB2 pstB1 phoU
    852 24673665
    NC_012925.1 G5L2G2 not specified CTTTTTCAATAAGTTTTCATC -[999670:999690] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0984
    ... ... 1000000 SSU0984
    852 24673665
    NC_012925.1 G5L2G2 not specified AAGGAAAATCTTACAC +[919922:919937] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0886 , SSU0885
    ... ... SSU0886 SSU0885
    852 24673665
    NC_012925.1 G5L2G2 not specified GATTTTCCTTCATTCTTTCAT -[919911:919931] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0886 , SSU0885
    ... ... SSU0886 SSU0885
    852 24673665
    NC_012925.1 G5L2G2 not specified TTTTTTCAATAATTTTACTGT +[1377409:1377429] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1350 , SSU1349 , rpmE2 (SSU1348) , SSU1351 , rpsN (SSU1352) , SSU1353 , SSU1354
    ... ... SSU1350 SSU1349 rpmE2 SSU1351 rpsN SSU1353 SSU1354
    852 24673665
    NC_012925.1 G5L2G2 not specified CCCTTTCTTTCATTTTTTCAA +[1584675:1584695] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1578 , SSU1577 , metE (SSU1579) , metF (SSU1580)
    ... ... SSU1578 SSU1577 metE metF
    852 24673665
    NC_012925.1 G5L2G2 not specified GAGAGAACGGTTTCTA -[1782533:1782548] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) ssnA (SSU1760) , hslO (SSU1761) , SSU1762
    ... ... ssnA hslO SSU1762
    852 24673665
    NC_012925.1 G5L2G2 not specified TTTTTTCAATGATTTTCTGAT -[1830185:1830205] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) rpmH (SSU1803) , SSU1802 , SSU1801 , SSU1800 , SSU1799 , SSU1798 , mutX (SSU1797) , SSU1796 , SSU1795 , SSU1794 , ksgA (SSU1793)
    ... ... rpmH SSU1802 SSU1801 SSU1800 SSU1799 SSU1798 mutX SSU1796 SSU1795 SSU1794 ksgA
    852 24673665
    NC_012925.1 G5L2G2 not specified GATTTTCTGGATATTTTCACC -[627012:627032] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0600
    ... ... SSU0600
    852 24673665
    NC_012925.1 G5L2G2 not specified ATGATAACGCTTTCTT -[716909:716924] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0688 , SSU0689 , SSU0690 , SSU0691 , SSU0692 , SSU0693
    ... ... SSU0688 SSU0689 SSU0690 SSU0691 SSU0692 SSU0693
    852 24673665
    NC_012925.1 G5L2G2 not specified CATTTTCCTAACCATTTTCAC -[941529:941549] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0911 , SSU0910
    ... ... SSU0911 SSU0910
    852 24673665
    NC_012925.1 G5L2G2 not specified ATTTTTCAAGCCTATTTCAGT -[583921:583941] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0556 , aroA (SSU0557) , aroK (SSU0558) , pheA (SSU0559) , SSU0560 , SSU0561
    ... ... SSU0556 aroA aroK pheA SSU0560 SSU0561
    852 24673665
    NC_012925.1 G5L2G2 not specified GATTTTCAGAAAGATGTTCAA -[752198:752218] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0718 , SSU0719 , SSU0720 , tRNA-Tyr (SSUt66)
    ... ... SSU0718 SSU0719 SSU0720 tRNA-Tyr
    852 24673665
    NC_012925.1 G5L2G2 not specified TCTTTTCATGCACCTTTTCAT +[851895:851915] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0821 , SSU0822
    ... ... SSU0821 SSU0822
    852 24673665
    NC_012925.1 G5L2G2 not specified TCTTTTCAAAATTATTTCTCT +[922767:922787] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU0889
    ... ... SSU0889
    852 24673665
    NC_012925.1 G5L2G2 not specified GTTTTTCCTGAAAATTCCGTA -[1039341:1039361] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1024 , zwf (SSU1025)
    ... ... SSU1024 zwf
    852 24673665
    NC_012925.1 G5L2G2 not specified GTTTTTCCAACAATTTCCGGA +[1261731:1261751] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) sly (SSU1231)
    ... ... sly
    852 24673665
    NC_012925.1 G5L2G2 not specified TTTTTTCAAGAAAATTTACAA +[1334374:1334394] Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SSU1302 , SSU1301 , SSU1300 , SSU1299 , SSU1298 , SSU1297
    ... ... SSU1302 SSU1301 SSU1300 SSU1299 SSU1298 SSU1297
    852 24673665

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AAGGAAACGCTTTCAT
    ATGTGAGCGTTTTCAA
    TTGAAAACACTTTCTA
    GTTTTTCATTTATTTTCAAGT
    ATGGAAGCGTTTTCTT
    ATGGAAGCGTTTTCAA
    ATGTAAACATTTTCAA
    ATTGAACCGTTTTCTT
    GGTTTTCACAAAAATTTCTGT
    CTTTTTCTATCCTTTTTTCAC
    CTTTTTCAAATCCTTTCCCTT
    TTATTTCAAAGATTTTCCAAT
    TTGAAAACTTTTTCTA
    GTTTTTCTGAAATTTTCATAC
    ATTTTTCAGAAAATTTCCATT
    AATTTTCAGAAAATTTCTTGA
    TTTTTTCATAAATTTTCAGTT
    CTTTTTCTTTAATTTTATCTA
    CTTTTTCATAAATTTTGCCTT
    TCTTTTCATAAAAATTCCAAT
    TGTTTTCCGAAATATTTTCAT
    GATTTTCAGTACATTTTTCAC
    GAGTAAACGTTTTCTT
    TTGTAATCGTTTTCTT
    TATTAAACGCTTTCAT
    AAGGAAACGCTTTCAT
    TATTTTCATTTTTCTTTTCAA
    CTCTTTCAAGCTATTTTCAAC
    GAGATAGCGCTTACAT
    TTGTAAACGTTTTCTT
    TTTTTTCTTGAAAAATCCCTT
    TATTCTCAAGCATTTTTTCAA
    TTGTAAGCCTTTTCTT
    TTTTTTCAAGAAATTTATCAA
    AAGAAAACGTTTGCAA
    ATAAAAACGCTTGCAA
    ATTAAAACGCTTTCTT
    ATGAAAACCCTTTCTT
    TTGCAACCGTTTTCTT
    TTGCAAGCATTTTCTA
    TTGTTTCATGACATTTTTGGC
    CATTTTCATAACCTTTCTGTA
    GCGTAACCGTTTTCTT
    GCTTTTCCGTAATATTTTAAA
    TCGAAAACGATTTCAA
    GCTTTTCAATTTGTTTTCAGT
    CAGAAAACGGTTACAA
    TTGAAACCACTTTCAA
    TCTTTTCTGAAAATATTTTGT
    GTGCAAACGTTTTCTT
    AAGATAACGTTTTCCA
    TTTTTTCCAAATTTTTCTCAC
    TATTTTCAAGTTCATTTTCAT
    CTTTTTCATAACTTTTCCTCC
    CATTTTCTTTCCAATTTTCAA
    CCTTTTCTGACATTTTTCTCT
    ATAGAAGCGTTTTCAT
    ACTTTTCTTTCAATTTTCCAA
    TTTTTTCATTTCATTTTTTCC
    CTTTTTCAATAAGTTTTCATC
    AAGGAAAATCTTACAC
    GATTTTCCTTCATTCTTTCAT
    TTTTTTCAATAATTTTACTGT
    CCCTTTCTTTCATTTTTTCAA
    GAGAGAACGGTTTCTA
    TTTTTTCAATGATTTTCTGAT
    GATTTTCTGGATATTTTCACC
    ATGATAACGCTTTCTT
    CATTTTCCTAACCATTTTCAC
    ATTTTTCAAGCCTATTTCAGT
    GATTTTCAGAAAGATGTTCAA
    TCTTTTCATGCACCTTTTCAT
    TCTTTTCAAAATTATTTCTCT
    GTTTTTCCTGAAAATTCCGTA
    GTTTTTCCAACAATTTCCGGA
    TTTTTTCAAGAAAATTTACAA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TTAAGGAAACGCTTTCATTTTTT
    ACTTGAAAACGCTCACATTTATT
    TGTAGAAAGTGTTTTCAAATGGT
    TACTTGAAAATAAATGAAAAACC
    TCAAGAAAACGCTTCCATGTAAA
    AAATGGAAGCGTTTTCAAAAAAA
    CTTTGAAAATGTTTACATGCTAG
    AAAAGAAAACGGTTCAATTACTT
    TACAGAAATTTTTGTGAAAACCT
    AGTGAAAAAAGGATAGAAAAAGA
    CAAGGGAAAGGATTTGAAAAAGT
    GATTGGAAAATCTTTGAAATAAC
    GTTAGAAAAAGTTTTCAATATTG
    GTATGAAAATTTCAGAAAAACAT
    AAATGGAAATTTTCTGAAAAATC
    GTCAAGAAATTTTCTGAAAATTC
    AACTGAAAATTTATGAAAAAAAT
    TAGATAAAATTAAAGAAAAAGGA
    CAAGGCAAAATTTATGAAAAAGA
    GATTGGAATTTTTATGAAAAGAC
    CAATGAAAATATTTCGGAAAACA
    GGTGAAAAATGTACTGAAAATCA
    AAAAGAAAACGTTTACTCGAAAA
    AAAAGAAAACGATTACAAAATCT
    TAATGAAAGCGTTTAATAGAAAA
    TTAAGGAAACGCTTTCATTTTTT
    GTTGAAAAGAAAAATGAAAATAA
    AGTTGAAAATAGCTTGAAAGAGA
    TAGAGATAGCGCTTACATTGTTT
    TTAAGAAAACGTTTACAAAGGTA
    AGAAGGGATTTTTCAAGAAAAAA
    TTGAAAAAATGCTTGAGAATATG
    AAAAGAAAAGGCTTACAAAGGAG
    TTGATAAATTTCTTGAAAAAAAT
    TTAAGAAAACGTTTGCAAAGACT
    TTATAAAAACGCTTGCAAACGGA
    TGAAGAAAGCGTTTTAATTGTCC
    TGAAGAAAGGGTTTTCATTGAGT
    ATAAGAAAACGGTTGCAATATCC
    GATAGAAAATGCTTGCAATTCTG
    TGCCAAAAATGTCATGAAACAAA
    GTACAGAAAGGTTATGAAAATGA
    AAAAGAAAACGGTTACGCATTTT
    GTTTAAAATATTACGGAAAAGCT
    TATTGAAATCGTTTTCGAATTTG
    TACTGAAAACAAATTGAAAAGCA
    GACAGAAAACGGTTACAATTGTA
    TCTTGAAAGTGGTTTCAAAAAGT
    TAACAAAATATTTTCAGAAAAGA
    TAAAGAAAACGTTTGCACAATTT
    AAAAGATAACGTTTTCCAGCGCT
    GTGAGAAAAATTTGGAAAAAACA
    CGATGAAAATGAACTTGAAAATA
    AGGAGGAAAAGTTATGAAAAAGA
    TTTTGAAAATTGGAAAGAAAATG
    AAGAGAAAAATGTCAGAAAAGGT
    TGATAGAAGCGTTTTCATTTTTG
    GTTGGAAAATTGAAAGAAAAGTA
    AGGAAAAAATGAAATGAAAAAAA
    TGATGAAAACTTATTGAAAAAGT
    TGAAGGAAAATCTTACACAAGTT
    CTATGAAAGAATGAAGGAAAATC
    TACAGTAAAATTATTGAAAAAAT
    AATTGAAAAAATGAAAGAAAGGG
    AAGAGAGAACGGTTTCTAATCTT
    ATCAGAAAATCATTGAAAAAAGA
    TGGTGAAAATATCCAGAAAATCC
    AAAAGAAAGCGTTATCATTGTTG
    TAGTGAAAATGGTTAGGAAAATG
    TACTGAAATAGGCTTGAAAAATT
    ATTGAACATCTTTCTGAAAATCG
    CAATGAAAAGGTGCATGAAAAGA
    AAGAGAAATAATTTTGAAAAGAT
    CTACGGAATTTTCAGGAAAAACG
    TTCCGGAAATTGTTGGAAAAACA
    TTTGTAAATTTTCTTGAAAAAAT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.