MexT - UniProtKB: Q9I0Z0 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

ATCACCCATGTCGATAGACACTAT
ATTTCAAACGTCGATGAATACTAT
ATCATTTCTGTCGATAGTTAATAG
ATCAACCTTATCGATAAGTACCAT
ATCACCGCCGTCGATCTCGACTAA
ATCAGCCCTGTCGATAGCGACTAT
ATCACTGTTCGTGAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

ATCACCCATGTCGATAGACACTAT
ATTTCAAACGTCGATGAATACTAT
ATCATTTCTGTCGATAGTTAATAG
ATCAACCTTATCGATAAGTACCAT
ATCACCGCCGTCGATCTCGACTAA
ATCAGCCCTGTCGATAGCGACTAT
ATCACTGTTCGTGATAATCAAAAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 Q9I0Z0 not specified ATCACCCATGTCGATAGACACTAT +[5477648:5477671] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) PA4881
    ... ... PA4881
    568 19846594
    NC_002516.2 Q9I0Z0 not specified ATTTCAAACGTCGATGAATACTAT -[5184414:5184437] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details Site directed mutagenesis (ECO:0005667) PA4623
    ... ... PA4623
    569 19846594
    NC_002516.2 Q9I0Z0 not specified ATCATTTCTGTCGATAGTTAATAG -[1887619:1887642] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA1744 , PA1743
    ... ... PA1744 PA1743
    570 19846594
    NC_002516.2 Q9I0Z0 not specified ATCAACCTTATCGATAAGTACCAT -[3119786:3119809] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA2759 , PA2760 , PA2761
    ... ... PA2759 PA2760 PA2761
    570 19846594
    NC_002516.2 Q9I0Z0 not specified ATCACCGCCGTCGATCTCGACTAA +[3616846:3616869] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA3229
    ... ... PA3229
    570 19846594
    NC_002516.2 Q9I0Z0 not specified ATCAGCCCTGTCGATAGCGACTAT +[4881947:4881970] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) PA4354 , PA4353 , PA4352 , PA4355 , xenB (PA4356)
    ... ... PA4354 PA4353 PA4352 PA4355 xenB
    570 19846594
    NC_002516.2 Q9I0Z0 not specified ATCACTGTTCGTGAT +[2808640:2808654] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) mexE (PA2493) , mexF (PA2494) , oprN (PA2495)
    ... ... mexE mexF oprN
    668 20727012

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    ATCACCCATGTCGATAGACACTAT
    ATTTCAAACGTCGATGAATACTAT
    ATCATTTCTGTCGATAGTTAATAG
    ATCAACCTTATCGATAAGTACCAT
    ATCACCGCCGTCGATCTCGACTAA
    ATCAGCCCTGTCGATAGCGACTAT
    ATCACTGTTCGTGAT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ATCACCCATGTCGATAGACACTAT
    ATTTCAAACGTCGATGAATACTAT
    ATCATTTCTGTCGATAGTTAATAG
    ATCAACCTTATCGATAAGTACCAT
    ATCACCGCCGTCGATCTCGACTAA
    ATCAGCCCTGTCGATAGCGACTAT
    ATCACTGTTCGTGATAATCAAAAT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.