LexA - UniProtKB: Q8YMM5 regulon and binding site collection of Nostoc sp. PCC 7120


Sites are listed as curated.

TAGTACTAATGTTCTA
GCGTACATTTGTACCA
TAGTTCTCATGTACTA
AAGTACTTATGTACTA
CAGTACTATTGTTCTA
TAGTATATCTGTTCTA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TAGTACTAATGTTCTA
TGGTACAAATGTACGC
TAGTTCTCATGTACTA
AAGTACTTATGTACTA
CAGTACTATTGTTCTA
TAGTATATCTGTTCTA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003272.1 Q8YMM5 dimer TAGTACTAATGTTCTA +[5854260:5854275] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details Site directed mutagenesis (ECO:0005667) alr4908 , alr4907
    ... ... alr4908 alr4907
    299 14652736
    NC_003272.1 Q8YMM5 dimer GCGTACATTTGTACCA -[5708260:5708275] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) all4790 , tsf (all4791)
    ... ... all4790 tsf
    303 14652736
    NC_003272.1 Q8YMM5 dimer TAGTTCTCATGTACTA +[5850230:5850245] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) all4904 , alr4905
    ... ... all4904 alr4905
    303 14652736
    NC_003272.1 Q8YMM5 dimer AAGTACTTATGTACTA +[91453:91468] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) mreB (all0087) , alr0088
    ... ... mreB alr0088
    303 14652736
    NC_003272.1 Q8YMM5 dimer CAGTACTATTGTTCTA +[4484827:4484842] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) alr3715 , uvrA (alr3716)
    ... ... alr3715 uvrA
    303 14652736
    NC_003272.1 Q8YMM5 dimer TAGTATATCTGTTCTA -[3945602:3945617] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) alr3273 , recA (all3272)
    ... ... alr3273 recA
    303 14652736

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TAGTACTAATGTTCTA
    GCGTACATTTGTACCA
    TAGTTCTCATGTACTA
    AAGTACTTATGTACTA
    CAGTACTATTGTTCTA
    TAGTATATCTGTTCTA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TAGTACTAATGTTCTA
    TGGTACAAATGTACGC
    TAGTTCTCATGTACTA
    AAGTACTTATGTACTA
    CAGTACTATTGTTCTA
    TAGTATATCTGTTCTA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.